View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12138_low_1 (Length: 370)

Name: NF12138_low_1
Description: NF12138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12138_low_1
NF12138_low_1
[»] chr4 (16 HSPs)
chr4 (11-355)||(6665570-6665914)
chr4 (14-278)||(6647160-6647427)
chr4 (14-271)||(6748944-6749201)
chr4 (14-355)||(6592883-6593227)
chr4 (14-277)||(6626541-6626804)
chr4 (12-355)||(6792470-6792816)
chr4 (14-194)||(6832436-6832616)
chr4 (175-355)||(6541121-6541300)
chr4 (15-278)||(6769565-6769831)
chr4 (147-278)||(6522345-6522480)
chr4 (16-102)||(6550328-6550414)
chr4 (14-355)||(6811918-6812262)
chr4 (16-68)||(6502239-6502291)
chr4 (61-121)||(4322798-4322858)
chr4 (319-355)||(6550072-6550108)
chr4 (319-347)||(6749249-6749277)
[»] scaffold0729 (1 HSPs)
scaffold0729 (12-355)||(5813-6159)
[»] chr6 (4 HSPs)
chr6 (137-216)||(5133506-5133585)
chr6 (61-122)||(5075426-5075487)
chr6 (40-121)||(5148655-5148736)
chr6 (63-120)||(5175114-5175171)
[»] chr7 (1 HSPs)
chr7 (40-120)||(36215589-36215669)
[»] chr3 (1 HSPs)
chr3 (142-205)||(32412467-32412530)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 355
Target Start/End: Original strand, 6665570 - 6665914
Alignment:
Q  11 cacagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6665570 cacagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatatgagctttttaattgggctgca 6665669  T
Q  111 ttcaaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6665670 ttcaaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 6665769  T
Q  211 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaaag 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6665770 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaactagtagaagccctagaaaaaag 6665869  T
Q  311 ttttcgatatttgagtgatgaagagaaacaaatattcctcgatat 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6665870 ttttcgatatttgagtgatgaagagaaacaaatattcctcgatat 6665914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 6647160 - 6647427
Alignment:
Q  14 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 113  Q
    |||||| ||||| |||||||||||  ||||||||||| |||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||    
T  6647160 agataggcatctactcaaggagcacagagttgaccatatatataaagtgaaagaattggatgaaagtgaatcaattgaactttttaattgggctgcattc 6647259  T
Q  114 aaccaag---catgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 210  Q
    |||||||   ||  ||  | ||||||||||| ||||||||| |||||  |||||||||||| | |||||||||||||||||||| ||   ||||||   |    
T  6647260 aaccaagcaacaacttctcgagaaggttttggtgaactttcaagacaattagttgcttattctaggggattgcctcttgctcttaaagcacttgggggtt 6647359  T
Q  211 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattcca 278  Q
     |||||||||||  ||||||||| |||||||| ||||||||||||| || |||| ||||||| |||||    
T  6647360 ttttgcatggaaaagaagtacttgagtggaaacgtgtgttgaggagtcttgaaacattttcctttcca 6647427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 6748944 - 6749201
Alignment:
Q  14 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 113  Q
    ||||||||| || ||||||||| |||  ||||||||| | ||||||||||||||| |||| |||||||||||| ||| |||||||||||||  ||| |||    
T  6748944 agatagacaactactcaaggagtatgttgttgaccatatctatagagtgaaagaactggacgaaagtgaatcacttgtgctttttaattggagtgccttc 6749043  T
Q  114 aaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatt 213  Q
    |  ||||||  ||     |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||  |||||||  |||||    
T  6749044 aggcaagcaacttcttacgaaggttttgctgaactttcaaaacagatagttgcttattgtgggggattgcctcttgctcttcaatcccttggggagtatt 6749143  T
Q  214 tgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttc 271  Q
    |||||||||| ||||||||| ||||||||||||| ||||| || || |||||||||||    
T  6749144 tgcatggaagggaagtacttgagtggaaaggtgttttgagtagtcttgaaagattttc 6749201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 6593227 - 6592883
Alignment:
Q  14 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 113  Q
    |||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||| || |  |||||||||  |||||||||    
T  6593227 agatagacatctactcaagaagcatggaattgaccatatatatagagtgaaagaattggatgaaagtgaatcacttaaagtttttaatttagctgcattc 6593128  T
Q  114 aaccaagcatgtttgcca---gaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 210  Q
    | |||||||      |||   |||| ||||  |||||||||||||||| |||||||||||| | |||||||||||||||||||| ||   |||||||| |    
T  6593127 agccaagcaacaactccacaagaagattttagtgaactttctagacagctagttgcttattctaggggattgcctcttgctcttaaagaacttgggttct 6593028  T
Q  211 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaaag 310  Q
     |||| |||||   |||| ||||||||||||   |||||||| ||| ||| ||||| ||||||||||| ||  || || |  |||||| || ||||| ||    
T  6593027 ttttgaatggagaggaagcacttaagtggaagaatgtgttgaagagtctcaaaagactttccattccagctccacgactacaagaagctcttgaaaagag 6592928  T
Q  311 ttttcgatatttgagtgatgaagagaaacaaatattcctcgatat 355  Q
    |||| |  ||||||||||||||||||||| ||||||||| |||||    
T  6592927 ttttagtgatttgagtgatgaagagaaacgaatattccttgatat 6592883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 6626804 - 6626541
Alignment:
Q  14 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 113  Q
    |||||||||||| || | ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||  |||||||||||||||||| |||||||    
T  6626804 agatagacatctacttatggagcatggagttgaccatatatataaagtgaaacaattggaagaaagtgaatcgattgagctttttaattggggtgcattc 6626705  T
Q  114 aaccaagcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatt 213  Q
    | |||||||      ||  ||||||||  |||||||||||| ||  |||||||||||| |  ||||||||||||||||||| ||  |||||||  || ||    
T  6626704 agccaagcaacaactcctcaaggttttagtgaactttctaggcaattagttgcttattctaagggattgcctcttgctcttaaagcccttggggagtttt 6626605  T
Q  214 tgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattcc 277  Q
    |||||||||  || | |||| |||||||| ||||||||| ||| || |||||||||||| ||||    
T  6626604 tgcatggaaaggacgcacttgagtggaaacgtgtgttgaagagtcttgaaagattttcctttcc 6626541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 6792470 - 6792816
Alignment:
Q  12 acagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcat 111  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| | || |||||||||||  |||||||||| |||   | ||  |    
T  6792470 acagatagacatctactcaaagagcatggagttgaccatatatatagagtgaaagaactagacgaaagtgaatcgcttgagcttttgaatcaaggtgtgt 6792569  T
Q  112 tcaaccaagcatgtttgcc---agaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggtt 208  Q
    ||  |||||||      ||   ||||| ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||| | || ||   ||||||      
T  6792570 tcggccaagcaacagctcctcaagaagattttggtgaactttctagacaagtagttgcttattctgggggactgcctcttggtgttaaagaacttgggaa 6792669  T
Q  209 gtatttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaa 308  Q
    || |||||||||||   | |||| | |||||||  |||||||||  || ||| ||||||||||||||||  ||  ||||| | ||||||| ||||||||     
T  6792670 gtttttgcatggaaaaaatgtacgtgagtggaagagtgtgttgaaaagtctccaaagattttccattcctgctctacaactactagaagctctagaaaag 6792769  T
Q  309 agttttcgatatttgagtgatgaagagaaacaaatattcctcgatat 355  Q
    |||||| |  |||||||||||||||||||||| |||||||| |||||    
T  6792770 agttttagtgatttgagtgatgaagagaaacacatattccttgatat 6792816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 6832436 - 6832616
Alignment:
Q  14 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 113  Q
    |||||||||||| |||||| | |||||||||||| || | ||  |||||||| || |||| |||||||||||  ||||||||||||||| || |||||||    
T  6832436 agatagacatctactcaagaaacatggagttgactatatctacggagtgaaacaactggacgaaagtgaatcgcttgagctttttaatttgggtgcattc 6832535  T
Q  114 aaccaagcatgtt-tgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctctt 194  Q
    |  ||||||  || ||  | ||| ||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  6832536 agacaagcaacttctggta-aagattttgttgaactttcgagacaagtagttgcttattctgggggattgcctcttgctctt 6832616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 355
Target Start/End: Complemental strand, 6541300 - 6541121
Alignment:
Q  175 ggggattgcctcttgctcttgaactccttgggttgtatttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccat 274  Q
    ||||||||||||||||||| |||   |||||||||| |||| ||||||| |||| |||| |||| ||   |||||||| ||| ||||||||| |||||||    
T  6541300 ggggattgcctcttgctctggaagaacttgggttgtttttgaatggaag-gaagcacttcagtgtaagaatgtgttgaagagtctcgaaagactttccat 6541202  T
Q  275 tccatctggacaacaagtagaagccctagaaaaaagttttcgatatttgagtgatgaagagaaacaaatattcctcgatat 355  Q
    |||| ||  || || |  |||||| |||||||| |||||| |  ||||||||||||||||||||||| ||||||| |||||    
T  6541201 tccagctccacgactacaagaagctctagaaaagagttttagggatttgagtgatgaagagaaacaagtattccttgatat 6541121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 6769565 - 6769831
Alignment:
Q  15 gatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattca 114  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||  ||||  ||||||||||  |||| ||||| |||||   ||||||||    
T  6769565 gatagacatctactcaaggagcatggagttgaccatatttatagagtgaaagagctggataaaagtgaatcgcttgatcttttgaattgcagtgcattca 6769664  T
Q  115 acca---agcatgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgta 211  Q
     |||   | || ||   ||||||| ||||| ||| || || ||||||  ||||||||||| | |||||| ||||||||||||| ||   ||||||  ||     
T  6769665 gccaaacaacacgtcctccagaagattttgttgatctatccagacagagagttgcttattctaggggatggcctcttgctcttaaagctcttgggaggtt 6769764  T
Q  212 tttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattcca 278  Q
    |||||||||||   |||||||| ||||||| ||| | ||||| ||  | |||| |||||||||||||    
T  6769765 tttgcatggaaagaaagtacttgagtggaagggtatattgagcagtattgaaaaattttccattcca 6769831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 6522480 - 6522345
Alignment:
Q  147 ctttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatttgcatggaagtgaagta----cttaagtggaaa 242  Q
    |||||||||||  ||||  |||||| |||||||||||||||||||||||||   ||||||| || |||||||||||  ||  ||    ||| ||||||||    
T  6522480 ctttctagacatttagtcacttattctgggggattgcctcttgctcttgaagaacttgggtcgtttttgcatggaaaagacatatatacttgagtggaaa 6522381  T
Q  243 ggtgtgttgaggagcctcgaaagattttccattcca 278  Q
    |||||||||||||| |||||||||||||||||||||    
T  6522380 ggtgtgttgaggagtctcgaaagattttccattcca 6522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 6550414 - 6550328
Alignment:
Q  16 atagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaatt 102  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||| | |||||||||  |||||||||||||||    
T  6550414 atagacatctcctcaaggagcatggatttgaccatatatatagagtcaaagaattggacggaagtgaatcgcttgagctttttaatt 6550328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 6811918 - 6812262
Alignment:
Q  14 agatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattc 113  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||| | ||  | | ||| ||| ||||| |||| ||  ||| |||||||    
T  6811918 agatagacatctactcaaggagcatggagtggaccatatatatagggtgaaagaacttgacaacactgagtcacttgaggttttgaaccggggtgcattc 6812017  T
Q  114 aaccaag---catgtttgccagaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgt 210  Q
    | ||| |   ||  |   ||||||| ||||| ||||||||  ||| ||||| || | |||| |||||||||||||||||||||| ||   ||| ||        
T  6812018 agccaggctacaattactccagaagattttgttgaactttgcagagaggtaatttcatattctgggggattgcctcttgctcttcaaaatcttcggacaa 6812117  T
Q  211 atttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaaag 310  Q
     |||||||||||  |||| || | ||||||  | | |||||||||| || |||||||| |||||||||| |  ||||| | | ||||| ||||| || ||    
T  6812118 ttttgcatggaaaagaagcacgtcagtggatggatatgttgaggagtctggaaagattgtccattccatttccacaactacttgaagctctagagaagag 6812217  T
Q  311 ttttcgatatttgagtgatgaagagaaacaaatattcctcgatat 355  Q
    |||||   |||||||||||||||| ||||| |||||||| |||||    
T  6812218 ttttcatgatttgagtgatgaagaaaaacatatattccttgatat 6812262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 6502291 - 6502239
Alignment:
Q  16 atagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaa 68  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  6502291 atagacatctgctcaaggagcatggagttgaccatatacatagagtgaaagaa 6502239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 4322858 - 4322798
Alignment:
Q  61 tgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaagc 121  Q
    |||||||| |||| |||||||||||  |||||||||||| ||||  ||||||||| |||||    
T  4322858 tgaaagaaatggatgaaagtgaatctcttgagctttttagttggcatgcattcaagcaagc 4322798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 6550108 - 6550072
Alignment:
Q  319 atttgagtgatgaagagaaacaaatattcctcgatat 355  Q
    |||||||||||||||||||||| |||||||| |||||    
T  6550108 atttgagtgatgaagagaaacatatattccttgatat 6550072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 6749249 - 6749277
Alignment:
Q  319 atttgagtgatgaagagaaacaaatattc 347  Q
    |||||||||||||||||||||||||||||    
T  6749249 atttgagtgatgaagagaaacaaatattc 6749277  T

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Target: scaffold0729 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 6159 - 5813
Alignment:
Q  12 acagatagacatcttctcaaggagcatggagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcat 111  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| | || |||||||||||  |||||||||| |||   | ||  |    
T  6159 acagatagacatctactcaaagagcatggagttgaccatatatatagagtgaaagaactagacgaaagtgaatcgcttgagcttttgaatcaaggtgtgt 6060  T
Q  112 tcaaccaagcatgtttgcc---agaaggttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggtt 208  Q
    ||  |||||||      ||   ||||| ||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||| | || ||   ||||||      
T  6059 tcggccaagcaacagctcctcaagaagattttggtgaactttctagacaagtagttgcttattctgggggactgcctcttggtgttaaagaacttgggaa 5960  T
Q  209 gtatttgcatggaagtgaagtacttaagtggaaaggtgtgttgaggagcctcgaaagattttccattccatctggacaacaagtagaagccctagaaaaa 308  Q
    || |||||||||||   | |||| | |||||||  |||||||||  || ||| ||||||||||||||||  ||  ||||| | ||||||| ||||||||     
T  5959 gtttttgcatggaaaaaatgtacgtgagtggaagagtgtgttgaaaagtctccaaagattttccattcctgctctacaactactagaagctctagaaaag 5860  T
Q  309 agttttcgatatttgagtgatgaagagaaacaaatattcctcgatat 355  Q
    |||||| |  |||||||||||||||||||||| |||||||| |||||    
T  5859 agttttagtgatttgagtgatgaagagaaacacatattccttgatat 5813  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 5133585 - 5133506
Alignment:
Q  137 ttttgctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgggttgtatttgc 216  Q
    |||||||||| |||||||| | |||||||  |||| ||||||||||||||| ||||| ||| |||||||||  |||||||    
T  5133585 ttttgctgaaatttctagagacgtagttgagtattctgggggattgcctctagctctagaagtccttgggtcatatttgc 5133506  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 5075487 - 5075426
Alignment:
Q  61 tgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaagca 122  Q
    |||||||| |||| |||||||||||| |||||||||||| ||||  ||||||||| ||||||    
T  5075487 tgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaaacaagca 5075426  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 5148736 - 5148655
Alignment:
Q  40 gagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaagc 121  Q
    |||||||||||||||| | | |||||||| |||| ||| |||||||| ||  |||||||| ||||  ||||||||| |||||    
T  5148736 gagttgaccatgtatacaaaatgaaagaaatggatgaaggtgaatcaattatgctttttagttggcatgcattcaagcaagc 5148655  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 5175114 - 5175171
Alignment:
Q  63 aaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaag 120  Q
    |||||| |||| |||||||||||| ||||||| |||||||||  ||||||||| ||||    
T  5175114 aaagaaatggatgaaagtgaatcaattgagctctttaattggcatgcattcaaacaag 5175171  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 36215669 - 36215589
Alignment:
Q  40 gagttgaccatgtatatagagtgaaagaattggaagaaagtgaatcatttgagctttttaattgggctgcattcaaccaag 120  Q
    |||||||||| |||||   | |||||||| |||| |||||||||||| |||||||||||| ||||  ||||||||| ||||    
T  36215669 gagttgaccaagtatacgcaatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaagcaag 36215589  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 32412530 - 32412467
Alignment:
Q  142 ctgaactttctagacaggtagttgcttattgtgggggattgcctcttgctcttgaactccttgg 205  Q
    ||||||| |||||| | || |||||||| ||||| |||||||| |||||||||||| |||||||    
T  32412530 ctgaactctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttgg 32412467  T

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