View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12138_low_2 (Length: 336)

Name: NF12138_low_2
Description: NF12138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12138_low_2
NF12138_low_2
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-328)||(158764-159091)


Alignment Details
Target: scaffold0020 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 158764 - 159091
Alignment:
Q  1 ctcattggatgaggtcgtaggagaatgcaatccacattccctgcagtaatccacatcaatcttatttccatttgcatttaggatcagacaacatcaagaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  158764 ctcattggatgaggtcgtaggagaatgcaatccatattccctgcagtaatccacatcaatcttatttccatttgcatttaggatccgacaacatcaagaa 158863  T
Q  101 tcatatattaggaaaataattgtgcttcgagaatcatataataggattacacaattctacgcttttccggaagtctagacattcccgatcatatttctgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  158864 tcatatattaggaaaataattgtgcttcgagaatcatataataggattacataattctacgcttttccggaagtctagacattcccgatcatatttctgg 158963  T
Q  201 aacataatctgaccagatcgcatatcctaaatgatatttttgacacttctaaccctatctcagcatttgtttcctaaccaaaaacaattccctcatcatt 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  158964 aacacaatctgaccagatcgcatatcctaaatgatatttttgacacttctaaccctatctcagcatttgtttcctaaccaaaaacaactccctcatcgtt 159063  T
Q  301 tctgttgtgtgactatttcacaggttct 328  Q
    ||||||||||||||||||||||||||||    
T  159064 tctgttgtgtgactatttcacaggttct 159091  T

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