View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12139_low_3 (Length: 300)
Name: NF12139_low_3
Description: NF12139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12139_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 31779189 - 31778916
Alignment:
| Q |
13 |
gagaaaaagatttgagttccaatgaaataataatcgataaagtcatccattttatgctcctcatgttgctcgttggcttggtgggactacaatgtcttgg |
112 |
Q |
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| T |
31779189 |
gagaaaaagatttgagtttcaatgaaataataatcgataaagtcatccattttatgctcctcatgttgctcgttggcttggtgggactacaatgtcttgg |
31779090 |
T |
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| Q |
113 |
aattagttggtgattggtgataatagtatagaacaagagtcttgagatgtattttcttttttatgcaagaattcattgaaatacacatgatataatgtat |
212 |
Q |
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| T |
31779089 |
aattagttggtgattggtgataatagtatagaacaagagtcttgagttgtattttcttttttatgcaagaattcattgaaatacacatgatataatgtat |
31778990 |
T |
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| Q |
213 |
tttcttcgttattcaattggtatatgcctaattcatattagagattgcatgtgttaattgcatagaaattagtg |
286 |
Q |
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| T |
31778989 |
ttttttcgttattcaattggtatatgcctaattcatattagagattgcatgtgttaattgcatagaaattagtg |
31778916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 1510018 - 1509754
Alignment:
| Q |
13 |
gagaaaaagatttgagttccaatgaaataataatcgataaagtcatccattttatgctcctcatgttgctcgttggcttggtgggactacaatgtcttgg |
112 |
Q |
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| T |
1510018 |
gagaaaaagatttgagtttcaatgaaatagt---cgataaagtcatccattttatgctcctcatgttgctcgttcgcttggtgggactacaatgtcttgg |
1509922 |
T |
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| Q |
113 |
aattagttggtgattggtgataatagtatagaacaagagtcttgagatgtattttctttttt-atgcaagaattcattgaaatacacatgatataatgta |
211 |
Q |
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| T |
1509921 |
aattagttggtgat-------aatagtatagaacaagagtcttgagttgtattttctttttttatgcaagaattcattgaaatacacatgatataatgta |
1509829 |
T |
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| Q |
212 |
ttttcttcgttattcaattggtatatgcctaattcatattagagattgcatgtgttaattgcatagaaattagtg |
286 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1509828 |
ttttattcattattcaattggtatatgcctaattcatattagagattgcatgtgttaattgcatagaaactagtg |
1509754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 37 - 281
Target Start/End: Original strand, 7474003 - 7474248
Alignment:
| Q |
37 |
aaataataatcgataaagtcatccattttatgctcctcatgttgctcg----ttggcttggtgggactacaatgt-cttggaattagttggtgattggtg |
131 |
Q |
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| T |
7474003 |
aaataataatcaataaagtcatgcattttatgctcttcttgttgctcgctgattggctcgctaggactacacagtgctagtaattagttggttataggtg |
7474102 |
T |
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| Q |
132 |
ataatagtatagaacaagagtcttgagatgtattttcttt-tttatgcaagaattcattgaaatacacatgatataatgtattttcttcgttattcaatt |
230 |
Q |
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| T |
7474103 |
ataataatatagaacaagattctttagatgtattttctttgtttatgcaaggattcgttgaaatacatgtgata-aatg--tttgcttcattcttcaatt |
7474199 |
T |
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| Q |
231 |
ggtatatgcctaattcatattagagattgcatgtgttaattgcatagaaat |
281 |
Q |
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| T |
7474200 |
ggtat-tgcc-aattcatattagagatttcatgtgtaaattgcgtagaaat |
7474248 |
T |
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