View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12139_low_9 (Length: 217)
Name: NF12139_low_9
Description: NF12139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12139_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34042907 - 34042706
Alignment:
| Q |
1 |
taacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaaagcgggag |
100 |
Q |
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| T |
34042907 |
taacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaacacaaagcgggag |
34042808 |
T |
|
| Q |
101 |
aagaatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatgacatgaattttctcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34042807 |
aagaatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatggcatgaattttctcaat |
34042708 |
T |
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| Q |
201 |
ga |
202 |
Q |
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|| |
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| T |
34042707 |
ga |
34042706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4046306 - 4046366
Alignment:
| Q |
1 |
taacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataa |
61 |
Q |
| |
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|||||||||||||||||| |||| ||||||||| |||| |||||||| ||||||| |||| |
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| T |
4046306 |
taacaaaaaatcagcacagcaaccatatgattcagaaactaaatcaactacaaattgataa |
4046366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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