View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_high_13 (Length: 528)

Name: NF1213_high_13
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_high_13
NF1213_high_13
[»] chr5 (4 HSPs)
chr5 (30-528)||(20477623-20478121)
chr5 (189-245)||(32267818-32267874)
chr5 (49-149)||(38267107-38267213)
chr5 (192-245)||(41901238-41901291)
[»] chr6 (27 HSPs)
chr6 (30-528)||(6432221-6432715)
chr6 (352-528)||(6402920-6403096)
chr6 (147-528)||(6410066-6410447)
chr6 (33-528)||(7131695-7132178)
chr6 (36-221)||(7993723-7993914)
chr6 (108-243)||(6602824-6602959)
chr6 (33-340)||(14820938-14821251)
chr6 (33-237)||(6426844-6427054)
chr6 (33-220)||(6594141-6594334)
chr6 (183-528)||(7119217-7119544)
chr6 (120-246)||(19632760-19632886)
chr6 (275-528)||(10579523-10579775)
chr6 (400-528)||(6585148-6585276)
chr6 (108-246)||(6596565-6596703)
chr6 (323-528)||(6394924-6395129)
chr6 (271-528)||(6416026-6416283)
chr6 (33-109)||(6403366-6403442)
chr6 (405-528)||(6596844-6596967)
chr6 (393-527)||(7994086-7994220)
chr6 (108-243)||(6395191-6395323)
chr6 (275-370)||(6426729-6426824)
chr6 (402-528)||(6589236-6589362)
chr6 (402-524)||(6594519-6594641)
chr6 (160-246)||(10579426-10579512)
chr6 (401-509)||(8913896-8914004)
chr6 (432-524)||(19632503-19632595)
chr6 (274-370)||(6589108-6589204)
[»] chr1 (6 HSPs)
chr1 (33-245)||(33160850-33161068)
chr1 (33-245)||(29691006-29691224)
chr1 (33-245)||(29718518-29718736)
chr1 (81-245)||(29658539-29658709)
chr1 (108-526)||(19468124-19468536)
chr1 (121-241)||(30827445-30827565)
[»] chr4 (8 HSPs)
chr4 (33-236)||(3438188-3438396)
chr4 (126-239)||(10634071-10634184)
chr4 (397-528)||(53761680-53761811)
chr4 (108-221)||(547283-547396)
chr4 (120-221)||(53761416-53761517)
chr4 (108-227)||(55908344-55908463)
chr4 (344-386)||(1548278-1548320)
chr4 (254-524)||(21834143-21834413)
[»] chr7 (5 HSPs)
chr7 (254-528)||(10614653-10614927)
chr7 (121-309)||(15091783-15091971)
chr7 (120-221)||(10169767-10169868)
chr7 (120-221)||(10177292-10177393)
chr7 (402-526)||(15092064-15092188)
[»] chr3 (4 HSPs)
chr3 (254-523)||(51764205-51764474)
chr3 (274-528)||(13470517-13470771)
chr3 (156-239)||(514392-514475)
chr3 (122-221)||(13470368-13470467)
[»] chr8 (1 HSPs)
chr8 (33-245)||(17627594-17627812)
[»] chr2 (1 HSPs)
chr2 (108-227)||(1037280-1037399)


Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 30 - 528
Target Start/End: Original strand, 20477623 - 20478121
Alignment:
Q  30 ctattatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagttgtttcttgcggatttggtgt 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20477623 ctattatccaagtgtccatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagttgtttcttgcggatttggtgt 20477722  T
Q  130 ctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacacatc 229  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20477723 ctataaatcttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacacatc 20477822  T
Q  230 tattgggaaagagagtgaagggtcttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaatt 329  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| |    
T  20477823 tatcgggaaagagagtgaagggtcttcggattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtcataatccatggttaagt 20477922  T
Q  330 gatgaaataataataatattttcttctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaa 429  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20477923 gatgaaataataataatatttgcttctatgttccccaatttgcaacatcttgattttccttggtgcaatcgtatatctgaagatatttgtcaattcttaa 20478022  T
Q  430 cgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478023 cgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 20478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 32267874 - 32267818
Alignment:
Q  189 aactgtccttcactttgtgagatcaaaatggaatacacatctattgggaaagagagt 245  Q
    ||||| ||||||||| ||||||||||||||||| |||||| |||||||||| |||||    
T  32267874 aactgcccttcacttagtgagatcaaaatggaacacacatgtattgggaaaaagagt 32267818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 38267107 - 38267213
Alignment:
Q  49 gtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgag------ttgtttcttgcggatttggtgtctataaaccttag 142  Q
    |||||||||||||||| |||||| | ||| ||||||| | |||||| | ||||||||||      ||||||||| |  || |||||||||||||||||||    
T  38267107 gtatacaacatttggaccttcaagaaactgattttctcactgatcaccatgttgccgagttgtctttgtttcttcctcatctggtgtctataaaccttag 38267206  T
Q  143 tgattgt 149  Q
    | |||||    
T  38267207 ttattgt 38267213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 41901238 - 41901291
Alignment:
Q  192 tgtccttcactttgtgagatcaaaatggaatacacatctattgggaaagagagt 245  Q
    |||||||||||| |||| ||||| |||||| |||||  ||||||||||||||||    
T  41901238 tgtccttcacttggtgatatcaatatggaagacacaggtattgggaaagagagt 41901291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 528
Target Start/End: Complemental strand, 6432715 - 6432221
Alignment:
Q  30 ctattatccaagtgtcgatgtatacaacatttggatcttcaaaagactt-attttctgaatgatcaacttgttgccgagt------tgtttcttgcggat 122  Q
    ||||||||||||||| ||| |||||||||||||||||||     ||||| ||||||| |||||||||| |||||||| ||      |||||||||| |||    
T  6432715 ctattatccaagtgtagatatatacaacatttggatctttgtg-gacttcattttctaaatgatcaacatgttgccgggtcgtctttgtttcttgctgat 6432617  T
Q  123 ttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaat 222  Q
    ||||||||||||||||||||| |||||    |||||||||||| |||| ||| |||||| ||| ||||||||||||       ||||||||||||||||     
T  6432616 ttggtgtctataaaccttagtaattgtcgatatctcacagaatcagccctgttttcactcgttggaaactgtcctt-------tgagatcaaaatggaac 6432524  T
Q  223 acacatctattgggaaagagagtgaagggtcttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccatt 322  Q
     ||| ||||||||||||| | ||| || |  || |||||  |||||     ||| |||||| ||||  || ||||||||||| ||||||   ||| |||     
T  6432523 gcacctctattgggaaagcgggtgtagagaattatgatttgttggata---ttgatgtataccctcagttaaagtctctctatttgggtcacaattcatg 6432427  T
Q  323 gttaattgatgaaataataataatattttcttctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaa 422  Q
    |||||   ||||||  || ||||| ||| |||| ||||||||||||||||||||||||||||||| ||||||  ||||||||  ||||| ||||||||||    
T  6432426 gttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatttgcgttggtgtcatcgtataaatgaaggtatttgtcaa 6432327  T
Q  423 ttcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgt 522  Q
     | |||| ||||||||||||  | |  ||||||||||||||    |||  || || |||||||| |||||| ||| ||| | ||||| ||||| ||||||    
T  6432326 gttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgt 6432227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 352 - 528
Target Start/End: Complemental strand, 6403096 - 6402920
Alignment:
Q  352 cttctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggca 451  Q
    |||| ||||| |||| ||||||||||||||| |||| ||||||| ||||||||||||||| |||||||||| | |||| ||||||||||||  | |||||    
T  6403096 cttccatttttcccagtttgcaacatcttgaattgcgttggtgcgatcgtatatctgaaggtatttgtcaagttttaaggagatgttgtaacattaggca 6402997  T
Q  452 tttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
    |||||||||| |||| |||  ||||| ||||||||||||||||||| ||| | ||||||| || || ||||||||||    
T  6402996 tttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgttgaact 6402920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 147 - 528
Target Start/End: Complemental strand, 6410447 - 6410066
Alignment:
Q  147 tgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacacatctattgggaaagagagtg 246  Q
    |||||| |||||||||||||||||  || |||||| |||||||| ||||||||||||  ||||||||||||| ||   |||  |||||||||||||||||    
T  6410447 tgtttgaatctcacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtg 6410348  T
Q  247 aagggtcttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataat 346  Q
     ||||  |||| |||||||||   ||||||||||||| |||| ||| ||||||||||| |||| |   ||| ||| ||||| |||||||||||| ||  |    
T  6410347 tagggcattctaattctttggttgagtttggtgtataccctcaattaaagtctctctatttggattacaatacatcgttaagtgatgaaataatcatttt 6410248  T
Q  347 attttcttctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagtta 446  Q
     ||| |||| ||||| |||||||| ||||  ||||||||| |  | ||| | |  |||||||||| |||||||||| | |||  || |||||||||| |     
T  6410247 gtttgcttccatttttcccaatttacaactacttgatttgacgggttgccagcaaatatctgaaggtatttgtcaagttttacagaaatgttgtaagctt 6410148  T
Q  447 aggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
    | ||||||| |||||||    ||   || || |||||||| |||||| ||| ||| | ||||| ||||| ||||||||||||    
T  6410147 aagcatttggacttagcctattgcaaaaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaact 6410066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 33 - 528
Target Start/End: Complemental strand, 7132178 - 7131695
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagttgt------ttcttgcggatttgg 126  Q
    ||||||||||| |||||||||||||||||| |||||      || ||||||||||||||| ||| |||| | |||||||      |||||   || ||      
T  7132178 ttatccaagtggcgatgtatacaacatttgaatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtcttggtttcttcgtgacttac 7132079  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    ||||| |||||||| |||| |||| |   |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  7132078 tgtctgtaaaccttcgtgactgttggatgctcacagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaatacac 7131979  T
Q  227 atctattgggaaagagagtgaagggtcttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgtta 326  Q
    | |||| ||||||||||||| ||||  |||                  | ||||||||||||  || ||||||||||| || ||||  |||  |  ||||    
T  7131978 agctatagggaaagagagtgtagggaattc------------------tagtgtatatcctcagttaaagtctctctatttaggtagaaatttacggtta 7131897  T
Q  327 attgatgaaataataataatattttcttctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattct 426  Q
    | |||||||| |||  |||||||  ||||  ||||||||||||| |||| ||||||||||  |   ||||||   |||||||||| |||||||||| | |    
T  7131896 actgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttt 7131797  T
Q  427 taacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaa 526  Q
    ||| |||||||| |||| | |  ||||||||||||||    |||  ||||| ||||||||||||||| ||| ||||  ||| ||||||||||||||||||    
T  7131796 taaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaa 7131697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 7993723 - 7993914
Alignment:
Q  36 tccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagttgt------ttcttgcggatttggtgt 129  Q
    |||||||||||||||||||||||||| |||||| |    | ||||||||||||||||| || |||||| |||||||      ||||||  ||||||||||    
T  7993723 tccaagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttgtcattacttcttggtgatttggtgt 7993822  T
Q  130 ctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 221  Q
    |||||||||||||||| |||  |   |||||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  7993823 ctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 7993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 6602824 - 6602959
Alignment:
Q  108 ttgtttcttgcggatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtg 207  Q
    ||||||||| |  ||||||||||||||||||||||||| ||||   | |||||||||||| |||||| |||||| |||| |||||||||||||||| |||    
T  6602824 ttgtttcttactaatttggtgtctataaaccttagtgaatgttcctacctcacagaattatccttgttttcacttgttaaaaactgtccttcacttagtg 6602923  T
Q  208 agatcaaaatggaatacacatctattgggaaagaga 243  Q
    |||||||||||||| |||||  ||||||||||||||    
T  6602924 agatcaaaatggaagacacagatattgggaaagaga 6602959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 33 - 340
Target Start/End: Complemental strand, 14821251 - 14820938
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagtt------gtttcttgcggatttgg 126  Q
    |||||||||| || |||||||||||||||||| |||||||  ||||||||||| ||| |||||| |||||  || ||      || |||||   ||||||    
T  14821251 ttatccaagtctccatgtatacaacatttggaacttcaaagcacttattttctaaataatcaacatgttgttgatttttgtttgtgtcttggtaatttgg 14821152  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    | ||||||||||||| |  ||||   ||||||||||||  | |||||| |||||| ||||| ||||||  |||||||  |||  |||||||||||| |||    
T  14821151 tatctataaaccttaatttttgtcatcatctcacagaaacaaccttgttttcactcgttaggaactgttattcacttattgaagtcaaaatggaatgcac 14821052  T
Q  227 atctattgggaaagagagtgaagggtcttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgtta 326  Q
      ||||||||||||||| || ||||  ||| |||||||| |   ||| ||||||||| |||| ||||||||||||||| ||||||   ||| ||| ||||    
T  14821051 ggctattgggaaagagaatgtagggaattcagattctttagttgagtatggtgtataccctcaattgaagtctctctatttgggtcacaattcatggtta 14820952  T
Q  327 attgatgaaataat 340  Q
    | ||||||||||||    
T  14820951 aatgatgaaataat 14820938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 6427054 - 6426844
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgag------ttgtttcttgcggatttgg 126  Q
    ||||||||||||| |||||||||||||||||| ||||  |  |||| |||||| |  |||||||||||||  |||      |||||| |||   | ||||    
T  6427054 ttatccaagtgtccatgtatacaacatttggaacttcgtagtacttcttttctaaccgatcaacttgttgatgagatgtgtttgttttttggtaagttgg 6426955  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    |||||||||||||||||| ||||   ||||||||||||  | | |||| |||||| |||||||||||||||||| || ||||||| |||||||||  |||    
T  6426954 tgtctataaaccttagtggttgtcatcatctcacagaaacaacattgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaaggcac 6426855  T
Q  227 atctattggga 237  Q
    ||| |||||||    
T  6426854 atcaattggga 6426844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 6594141 - 6594334
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgag------ttgtttcttgcggatttgg 126  Q
    |||||||||||||||||||||||||||||| ||||| |  |  ||  ||||||||||||||||| ||||||||||      ||||||||||| | ||||     
T  6594141 ttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtctttgtttcttgctggtttga 6594240  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatgga 220  Q
     ||| || |||||||||  |||    ||||||||||||| ||| |||| |||||| |||||||  ||||||| |||| |||| |||||||||||    
T  6594241 agtccattaaccttagttcttgcaaccatctcacagaatcagctttgttttcacttgttagaagttgtcctttacttagtgatatcaaaatgga 6594334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 183 - 528
Target Start/End: Complemental strand, 7119544 - 7119217
Alignment:
Q  183 gttagaaactgtccttcactttgtgagatcaaaatggaatacacatctattgggaaagagagtgaagggtcttctgattctttggagcagtttggtgtat 282  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||| |||| ||||||||||||| ||||  |||                  | ||||||    
T  7119544 gttagaaactgcccttcacttagtgagttcaaaatggaatacacagctatagggaaagagagtgtagggaattc------------------tagtgtat 7119463  T
Q  283 atcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttcttctattttccccaatttgcaacatcttga 382  Q
    ||||||  || ||||||||||| || ||||  |||  |  ||||| |||||||| |||  |||||||  ||||  ||||||||||||| |||| ||||||    
T  7119462 atcctcagttaaagtctctctatttaggtagaaatttacggttaactgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttga 7119363  T
Q  383 tttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaag 482  Q
    ||||  |   ||||||   |||||||||| |||||||||| | |||| |||||||| |||| | |  ||||||||||||||    |||  ||||| ||||    
T  7119362 tttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaag 7119263  T
Q  483 ctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
    ||||||||||| ||| ||||  ||| ||||||||||||||||||||    
T  7119262 ctacttggaatgaactttgttgttcaccagctggaggtgttgaact 7119217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 19632886 - 19632760
Alignment:
Q  120 gatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatgg 219  Q
    |||||||||||||| ||||||| ||| |||| | | |||||||||||| | |||| ||| || ||||| || |||||||||||| |||||||||||||||    
T  19632886 gatttggtgtctatcaaccttaatgactgttggaagctcacagaattatcattgttttcgctcgttagtaattgtccttcacttagtgagatcaaaatgg 19632787  T
Q  220 aatacacatctattgggaaagagagtg 246  Q
    || || |||||||| | ||||| ||||    
T  19632786 aaaacgcatctatttgaaaagaaagtg 19632760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 528
Target Start/End: Original strand, 10579523 - 10579775
Alignment:
Q  275 tggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttcttctattttccccaatttgcaa 374  Q
    ||||||||| |||| ||| || |||||||| |||||||  ||| ||||||||  ||||||||| || ||||| ||  ||||  ||||||||||||||||     
T  10579523 tggtgtata-cctcaattaaaatctctctatttgggtagaaattcattgttacgtgatgaaatgattataatgttagcttcctttttccccaatttgcag 10579621  T
Q  375 catcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaa 474  Q
    |  |||||||||  |   ||| |    |||||||||| ||||| |||| | | |   |||||| ||||| | | |||||||||||||||   ||||| ||    
T  10579622 ctgcttgatttgaatacttgcgaatacatatctgaaggtatttttcaagtttcaggaagatgtggtaagattaagcatttgaacttagccaaatgtccaa 10579721  T
Q  475 gagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
    ||| ||||| |||| |||||||  ||||||||||||||||||||||||||||||    
T  10579722 gagtgaagcgacttagaataaagattgtaattccccagctggaggtgttgaact 10579775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 528
Target Start/End: Original strand, 6585148 - 6585276
Alignment:
Q  400 gtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgt 499  Q
    |||||||||||| |||||||||  | |||| |||||||| |||  | ||||||||||||||  |||| |||  ||||| ||||||||||||||||||| |    
T  6585148 gtatatctgaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactt 6585247  T
Q  500 tgtaattccccagctggaggtgttgaact 528  Q
    | || || ||||| ||||||| |||||||    
T  6585248 tttagttacccagttggaggtattgaact 6585276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 6596565 - 6596703
Alignment:
Q  108 ttgtttcttgcggatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtg 207  Q
    ||||||||||  |||||||| ||||||||||||| | ||||||     |||||||||| |||| ||| ||| || || ||||| |||||||| ||| |||    
T  6596565 ttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttttccctcgtaagaaattgtccttcgcttagtg 6596664  T
Q  208 agatcaaaatggaatacacatctattgggaaagagagtg 246  Q
    ||||||||||| || ||||| |||||||||  |||||||    
T  6596665 agatcaaaatgcaaaacacagctattgggacggagagtg 6596703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 528
Target Start/End: Complemental strand, 6395129 - 6394924
Alignment:
Q  323 gttaattgatgaaataataataatattttcttctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaa 422  Q
    |||||| ||||||||||| ||||| ||| |||| |||||||||||||| || |  ||||||||| |  | |||   |  |||||||||| ||||||||||    
T  6395129 gttaatagatgaaataatcataatgtttacttccattttccccaatttacagctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaa 6395030  T
Q  423 ttcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgt 522  Q
     | |||| || |||||||||| | |  |||||||||||||||   |||  || || ||| |||| |||||| ||| ||| | ||||| ||||||||||||    
T  6395029 gttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgt 6394930  T
Q  523 tgaact 528  Q
    ||||||    
T  6394929 tgaact 6394924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 528
Target Start/End: Complemental strand, 6416283 - 6416026
Alignment:
Q  271 agtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttcttctattttccccaattt 370  Q
    ||||||||||||| |||| ||| ||||||||||| ||||| |  |||  || |||||  ||||||   || ||||| |||||||| |  |||||||||||    
T  6416283 agtttggtgtataccctcaattaaagtctctctatttgggaaaaaataaatggttaagcgatgaaggtatcataatgttttcttccaacttccccaattt 6416184  T
Q  371 gcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgt 470  Q
    ||| |  |||||||||  | | || ||||   ||||||||| |||||||||| | |||| || |||||||||| |  ||||||||||||||||    |||    
T  6416183 gcagctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgt 6416084  T
Q  471 cgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
      || || |||||||| ||||||  || ||||| ||||| | ||||||||||||||||    
T  6416083 aaaaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaact 6416026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 6403442 - 6403366
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagtt 109  Q
    |||||||||||| ||||||||||||||||||||||| | || | ||||||||||||||||  || |||||| |||||    
T  6403442 ttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctgagtt 6403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 528
Target Start/End: Original strand, 6596844 - 6596967
Alignment:
Q  405 tctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaa 504  Q
    ||||||| |||||||||| | || | |||||||  |||| | | ||||||||||| ||| | ||||  ||| | ||||| ||||| ||||||| ||| ||    
T  6596844 tctgaaggtatttgtcaagttttcaggagatgtgataagattaagcatttgaactgagccgaatgttcaagtgtgaagcgacttgaaataaactttgaaa 6596943  T
Q  505 ttccccagctggaggtgttgaact 528  Q
    ||||||||||||||||||||||||    
T  6596944 ttccccagctggaggtgttgaact 6596967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 393 - 527
Target Start/End: Original strand, 7994086 - 7994220
Alignment:
Q  393 tgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaa 492  Q
    |||||| |||||||||||| ||||||| |  | |||| || |||||||||| | |||||||||||| |||| |  |||  ||||| ||||||||| ||||    
T  7994086 tgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaa 7994185  T
Q  493 taaacgttgtaattccccagctggaggtgttgaac 527  Q
    | ||| ||||| ||||  |||| ||||||||||||    
T  7994186 tgaactttgtagttccgaagctagaggtgttgaac 7994220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 6395323 - 6395191
Alignment:
Q  108 ttgtttcttgcggatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtg 207  Q
    ||||||||||   ||||||| |||||||||||| ||| | |||   |||||||||||  | |||| | |||||| ||||||||||||||||  |||   |    
T  6395323 ttgtttcttggtaatttggtatctataaacctttgtggtggtt---atctcacagaaacaacctttttttcactcgttagaaactgtcctttgcttaccg 6395227  T
Q  208 agatcaaaatggaatacacatctattgggaaagaga 243  Q
    |||| ||||||||| |||||| ||||||||||||||    
T  6395226 agattaaaatggaaaacacatgtattgggaaagaga 6395191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 370
Target Start/End: Complemental strand, 6426824 - 6426729
Alignment:
Q  275 tggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttcttctattttccccaattt 370  Q
    ||||||||| |||| |||||||||||||||  ||||||  ||| ||| ||||| ||||||||| || ||||| | | |||| ||||||||||||||    
T  6426824 tggtgtataccctcaattgaagtctctctatctgggtagaaattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaattt 6426729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 528
Target Start/End: Original strand, 6589236 - 6589362
Alignment:
Q  402 atatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttg 501  Q
    |||||| ||| |||||||||| | || |  |||||||||||| | |||||||||||||||||    |||   | || ||||||||||||||| ||| |||    
T  6589236 atatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttg 6589335  T
Q  502 taattccccagctggaggtgttgaact 528  Q
    || |||||  |||||||||||||||||    
T  6589336 tagttcccatgctggaggtgttgaact 6589362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 524
Target Start/End: Original strand, 6594519 - 6594641
Alignment:
Q  402 atatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttg 501  Q
    |||||||||| |||||||||| | |||| |||||||| |||| | |  |||||| ||||| | || |||  ||||| |||||||| |||||||||| ||     
T  6594519 atatctgaaggtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttt 6594618  T
Q  502 taattccccagctggaggtgttg 524  Q
    || ||||| | ||||||||||||    
T  6594619 tagttcccaaactggaggtgttg 6594641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 10579426 - 10579512
Alignment:
Q  160 cagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacacatctattgggaaagagagtg 246  Q
    |||||| |||||||| ||| || || ||||| |||||||| ||| ||||||||||||||||| ||||| ||||| ||| | ||||||    
T  10579426 cagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaaaacacagctatttggacaaagagtg 10579512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 509
Target Start/End: Original strand, 8913896 - 8914004
Alignment:
Q  401 tatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgtt 500  Q
    ||||||| ||| |||||||||| | ||||  |||||||||||| | |  ||||||||||| | ||||||   ||||| ||||||||||| ||||||| ||    
T  8913896 tatatctaaaggtatttgtcaagttttaagaagatgttgtaagattaaacatttgaacttcgttggatgatcaagagtgaagctacttgcaataaacttt 8913995  T
Q  501 gtaattccc 509  Q
    ||| |||||    
T  8913996 gtagttccc 8914004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 524
Target Start/End: Complemental strand, 19632595 - 19632503
Alignment:
Q  432 agatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttg 524  Q
    |||||||||||| ||| ||||||||||||| || |||||  || ||  || ||||||||||||||| || || ||||| |||| |||||||||    
T  19632595 agatgttgtaagataacgcatttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttg 19632503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 370
Target Start/End: Original strand, 6589108 - 6589204
Alignment:
Q  274 ttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttcttctattttccccaattt 370  Q
    |||||||  |||||| ||| ||||||||||| |||||||  ||| ||| ||||| ||||| ||  || ||||| ||| |||| ||||||||||||||    
T  6589108 ttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaattt 6589204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 33161068 - 33160850
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagtt------gtttcttgcggatttgg 126  Q
    |||||||| |||| || ||||||| ||||||||||  |  | |||||||||||||||||||||| ||||||||||||      ||||||||| | |||||    
T  33161068 ttatccaactgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttgg 33160969  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    ||||||||||||||| ||  |||| |   |||||||||| ||| |||| |||||| |||| |||||||||||||||| |||| ||||||||||||| |||    
T  33160968 tgtctataaaccttaatggatgttggaggctcacagaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcac 33160869  T
Q  227 atctattgggaaagagagt 245  Q
    | |||||||||||||||||    
T  33160868 aactattgggaaagagagt 33160850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 29691006 - 29691224
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagtt------gtttcttgcggatttgg 126  Q
    |||||||| | || || |||||||||||||||||||    | ||| ||||||| |||||||||| ||||||||||||      |||||||||  ||||||    
T  29691006 ttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttgg 29691105  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    ||||||||||||||| ||  |||| | | || ||||||| ||| |||| ||| || |||| ||| |||||||||||| |||| |||||||||||||||||    
T  29691106 tgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaatacac 29691205  T
Q  227 atctattgggaaagagagt 245  Q
    | |||||||||| ||||||    
T  29691206 aactattgggaatgagagt 29691224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 29718518 - 29718736
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagtt------gtttcttgcggatttgg 126  Q
    |||||||| | || || |||||||||||||||||||    | ||| ||||||| |||||||||| ||||||||||||      |||||||||  ||||||    
T  29718518 ttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttgg 29718617  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    ||||||||||||||| ||  |||| | | || ||||||| ||| |||| ||| || |||| ||| |||||||||||| |||| |||||||||||||||||    
T  29718618 tgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaatacac 29718717  T
Q  227 atctattgggaaagagagt 245  Q
    | |||||||||| ||||||    
T  29718718 aactattgggaatgagagt 29718736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 29658539 - 29658709
Alignment:
Q  81 tttctgaatgatcaacttgttgccgagtt------gtttcttgcggatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgt 174  Q
    ||||| |||||||||| ||||||||||||      |||||||||  ||||||||||||||||||||| ||  |||| | | || ||||||| ||| ||||    
T  29658539 tttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgt 29658638  T
Q  175 attcactagttagaaactgtccttcactttgtgagatcaaaatggaatacacatctattgggaaagagagt 245  Q
     ||| || |||| ||| |||||||||||| |||| |||||||||||||||||| |||||||||| ||||||    
T  29658639 tttcgctcgttataaattgtccttcacttagtgacatcaaaatggaatacacaactattgggaatgagagt 29658709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 108 - 526
Target Start/End: Original strand, 19468124 - 19468536
Alignment:
Q  108 ttgtttcttgcggatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtg 207  Q
    ||||||||||  ||||| |||||||||||||||||||| ||| || | |||||| | | | |||||| | |||| ||||| || |||||||||||| |||    
T  19468124 ttgtttcttggtgatttagtgtctataaaccttagtgaatgtatggacctcacatattcaaccttgtttacactcgttaggaattgtccttcacttagtg 19468223  T
Q  208 agatcaaaatggaatacacatctattgggaaagagagtgaagggtcttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctactt 307  Q
    |||||||||||||| |      ||||||||   |||||| || |  |||||||||||||  | | ||||||||||  |||| ||| |||| |||||||||    
T  19468224 agatcaaaatggaaaa------tattgggagtaagagtgtagagaattctgattctttgccggattttggtgtattccctcaattaaagtatctctactt 19468317  T
Q  308 gggtattaatccattgttaattgatgaaataataataatattttcttctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatct 407  Q
    || |   ||| ||| |||||  |||||||  || ||||| ||| |||| ||||| ||||||||||| |  |||||||||   |  ||||| |  |||||     
T  19468318 ggctgagaattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcg 19468417  T
Q  408 gaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattc 507  Q
    ||||  ||||||||| | |||| ||| |||| |||  | |||||||| ||||||||    |||  ||||| ||| ||||||||| | ||| ||||| |||    
T  19468418 gaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttc 19468517  T
Q  508 cccagctggaggtgttgaa 526  Q
    || ||||||||||||||||    
T  19468518 ccaagctggaggtgttgaa 19468536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 30827565 - 30827445
Alignment:
Q  121 atttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatgga 220  Q
    |||| |||||||||||||||| |   |||| | | || ||||||| ||| |||| ||| || |||| ||| ||||||||||||  ||| ||||||||||     
T  30827565 atttagtgtctataaaccttactcgatgttggaagctaacagaatcagctttgttttcgctcgttacaaattgtccttcacttactgacatcaaaatggt 30827466  T
Q  221 atacacatctattgggaaaga 241  Q
      ||||| |||||||||||||    
T  30827465 tcacacaactattgggaaaga 30827445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 3438188 - 3438396
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagttgt------ttcttgcggatttgg 126  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||  | ||||| | ||||||      ||| ||  |||||||    
T  3438188 ttatccaagtgtcaatgtatacaacatttggatcttcaaaa-acttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgatttgg 3438286  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    |||||||||||||||||||||||| |   |||||| |||||||||| | ||||||  |||| || |||||||||||| ||||||| |||||||||| |||    
T  3438287 tgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactcattagtaattgtccttcacttagtgagataaaaatggaatgcac 3438386  T
Q  227 atctattggg 236  Q
    ||||||||||    
T  3438387 atctattggg 3438396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 10634071 - 10634184
Alignment:
Q  126 gtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaataca 225  Q
    |||||||||||||||||||| ||| ||  |||||  || ||| | || | ||  |||||||||||||||||||||||| |||||||||||||||||| ||    
T  10634071 gtgtctataaaccttagtgaatgtatgtttctcatcgagttatcgtttttttacctagttagaaactgtccttcacttagtgagatcaaaatggaatgca 10634170  T
Q  226 catctattgggaaa 239  Q
    | ||||||||||||    
T  10634171 cgtctattgggaaa 10634184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 528
Target Start/End: Original strand, 53761680 - 53761811
Alignment:
Q  397 atcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaa 496  Q
    |||| |||||| ||| |||||||||| | |||| ||||||||||||  | ||||||||||||||||| |  |||  ||||| ||||||| ||||||| ||    
T  53761680 atcgaatatctaaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaa 53761779  T
Q  497 cgttgtaattccccagctggaggtgttgaact 528  Q
    | ||||| ||||| |||| |||| ||||||||    
T  53761780 ctttgtagttcccaagctagaggcgttgaact 53761811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 547396 - 547283
Alignment:
Q  108 ttgtttcttgcggatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtg 207  Q
    ||||||||||  ||||||| || ||||||||||||| | |||  ||| |||||| | |||||||||| | |||| ||||| || ||| |||||||| |||    
T  547396 ttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcacttagtg 547297  T
Q  208 agatcaaaatggaa 221  Q
    ||||||||||||||    
T  547296 agatcaaaatggaa 547283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 53761416 - 53761517
Alignment:
Q  120 gatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatgg 219  Q
    ||||||||||| ||||||||||||  |||||   |  ||||| |||| ||||||| | |||| | || |||||||||||||||| |||||||||||||||    
T  53761416 gatttggtgtccataaaccttagtcgttgttataagatcacaaaattggccttgtttgcacttgctaaaaactgtccttcacttagtgagatcaaaatgg 53761515  T
Q  220 aa 221  Q
    ||    
T  53761516 aa 53761517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 55908344 - 55908463
Alignment:
Q  108 ttgtttcttgcggatttggtgtctataaaccttagtgattgtttgcat-ctcacagaattagccttgtattcactagttagaaactgtccttcactttgt 206  Q
    ||||||||||  |||||||||||||||||||||||||| || | |||| |||||||| |  ||| ||| | |||| ||||| || ||||||||||||  |    
T  55908344 ttgtttcttggtgatttggtgtctataaaccttagtgaatg-tagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttatt 55908442  T
Q  207 gagatcaaaatggaatacaca 227  Q
    ||| ||||||||||| |||||    
T  55908443 gaggtcaaaatggaacacaca 55908463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 1548278 - 1548320
Alignment:
Q  344 aatattttcttctattttccccaatttgcaacatcttgatttg 386  Q
    |||||||||||| |||||||||||||||||||  |||||||||    
T  1548278 aatattttcttcgattttccccaatttgcaactgcttgatttg 1548320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 524
Target Start/End: Original strand, 21834143 - 21834413
Alignment:
Q  254 ttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttct 353  Q
    |||||| ||||||| | | |||||||| || |||| ||| ||||||||||  |||||    ||| ||| ||||| |||||||| ||| ||||| ||| ||    
T  21834143 ttctgaatctttggtggattttggtgtgtaccctcaattaaagtctctctttttgggccgcaattcatggttaaatgatgaaagaatcataatgtttgct 21834242  T
Q  354 tctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatt 453  Q
    || |||||||||||||| || |  ||||||||| |||  | ||  |  ||||| |||| ||||||  || | |||| || |||||||||| | | |||||    
T  21834243 tcaattttccccaatttacagctgcttgatttgacttcttccacacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatt 21834342  T
Q  454 tgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttg 524  Q
    |||||||| | || |||   | || |||||||| | | || ||| ||||| ||||| ||||||||||||||    
T  21834343 tgaacttatcaggttgttataaagtgaagctacatagtatcaactttgtagttcccaagctggaggtgttg 21834413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 254 - 528
Target Start/End: Complemental strand, 10614927 - 10614653
Alignment:
Q  254 ttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttct 353  Q
    ||||||||| |||| | ||||||||||||| |||| ||| ||||||||||| ||||| |  ||||  | |||||  ||||||   || ||||  ||| ||    
T  10614927 ttctgattcattggcggagtttggtgtataccctcaattaaagtctctctatttgggaaaaaatcagtggttaagcgatgaaggcattataaagtttgct 10614828  T
Q  354 tctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatt 453  Q
    || | |||||||||||||||||  |||||||||  | | |||||||   ||| ||||| |||||||||| | |||| || |||||||||| | |||||||    
T  10614827 tccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaagattaggcatt 10614728  T
Q  454 tgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
    ||||||||||    |||  || || ||||||||||||||| ||||||||  ||||| | ||||||||||||||||    
T  10614727 tgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaact 10614653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 309
Target Start/End: Original strand, 15091783 - 15091971
Alignment:
Q  121 atttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatgga 220  Q
    ||||||||||||||||||||| || ||||    |||||||||||  | |||||| |||||| | ||||||||||||||| |||  ||| ||||||||| |    
T  15091783 atttggtgtctataaaccttaatgcttgtcgtaatctcacagaaacaaccttgttttcactcggtagaaactgtccttcgcttattgaaatcaaaatgaa 15091882  T
Q  221 atacacatctattgggaaagagagtgaagggtcttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgg 309  Q
    || |||  ||| |||| ||| ||| | |||   ||| |||||||| |   ||||||||||||| |||| ||| ||||||||||| ||||    
T  15091883 atgcacggctactggggaagcgagcgtaggacattcagattctttagttgagtttggtgtataccctcaattaaagtctctctatttgg 15091971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 10169767 - 10169868
Alignment:
Q  120 gatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatgg 219  Q
    ||||| |||||| ||||||||||| | |||||| |  ||||| | | | |||||| | |||| ||||| || |||||||||||| |||||||||||||||    
T  10169767 gatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatgg 10169866  T
Q  220 aa 221  Q
    ||    
T  10169867 aa 10169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 10177292 - 10177393
Alignment:
Q  120 gatttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatgg 219  Q
    ||||| |||||| ||||||||||| | |||||| |  ||||| | | | |||||| | |||| ||||| || |||||||||||| |||||||||||||||    
T  10177292 gatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatgg 10177391  T
Q  220 aa 221  Q
    ||    
T  10177392 aa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 526
Target Start/End: Original strand, 15092064 - 15092188
Alignment:
Q  402 atatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttg 501  Q
    |||||| ||| ||||| |||| | |||| || ||||| |||| | |  |||||||||||| ||||||||  ||| | ||| |||| |||||| ||| |||    
T  15092064 atatctcaaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttg 15092163  T
Q  502 taattccccagctggaggtgttgaa 526  Q
     | ||||| ||||||||||||||||    
T  15092164 cagttcccgagctggaggtgttgaa 15092188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 254 - 523
Target Start/End: Original strand, 51764205 - 51764474
Alignment:
Q  254 ttctgattctttggagcagtttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttct 353  Q
    |||||||||||||| | | ||||||||||| |||| ||| |||||||||||  |||||   ||| ||| ||||| ||||||||  || ||||| ||| ||    
T  51764205 ttctgattctttggtggactttggtgtataccctcaattaaagtctctctatctgggtgaaaatacatggttaagtgatgaaagcatcataatgtttgct 51764304  T
Q  354 tctattttccccaatttgcaacatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatt 453  Q
    || ||||||||||||||||| |  ||||||||   ||  |||||||| |||||| ||| | | ||| || | |||| |||||||| |||| | |||||||    
T  51764305 tccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaaggagatgttctaagattaggcatt 51764404  T
Q  454 tgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgtt 523  Q
    ||||| || | | ||||  ||||| ||||||||||||||| ||| ||| | ||||  |||||||||||||    
T  51764405 tgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgtt 51764474  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 528
Target Start/End: Original strand, 13470517 - 13470771
Alignment:
Q  274 ttggtgtatatcctcgattgaagtctctctacttgggtattaatccattgttaattgatgaaataataataatattttcttctattttccccaatttgca 373  Q
    |||||||||| |||| ||| ||||||||||| ||||| |  |||| || ||||| |||||||   || ||||| ||| |||| | |||||||||||||||    
T  13470517 ttggtgtataccctcaattaaagtctctctatttgggaaaaaatcaatggttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgca 13470616  T
Q  374 acatcttgatttgccttggtgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcga 473  Q
     |  |||||||||  ||| |||||||   ||||  ||| |||||||||| | |||| || |||||||||| | |||||||||||||||||    |||  |    
T  13470617 gctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaa 13470716  T
Q  474 agagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaact 528  Q
    | || ||||||||||||||| ||| ||||  ||||| | ||||||||||||||||    
T  13470717 aaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaact 13470771  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 514392 - 514475
Alignment:
Q  156 ctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacacatctattgggaaa 239  Q
    |||||| | ||| |||||| | |||| ||||  ||||||||||||||| |||||||||||||| | ||||||  ||||||||||    
T  514392 ctcacacatttatccttgtttgcacttgttaagaactgtccttcacttagtgagatcaaaatgaattacacaagtattgggaaa 514475  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 13470368 - 13470467
Alignment:
Q  122 tttggtgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 221  Q
    |||| |||| ||||||||||||  |||| |  | |||||| ||||||| |||||| ||||   |||||||||||||  |||| |||||||||||||||||    
T  13470368 tttgatgtccataaaccttagttgttgtcttaagctcacaaaattagctttgtatgcactcactagaaactgtcctctacttagtgagatcaaaatggaa 13470467  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 17627594 - 17627812
Alignment:
Q  33 ttatccaagtgtcgatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagttgt------ttcttgcggatttgg 126  Q
    ||||||| ||||| |||||| |||||||||||||||||  |  |||||||| ||||| |||||| | ||   |||||||      ||||||   ||||||    
T  17627594 ttatccatgtgtcaatgtatccaacatttggatcttcagtatgcttattttttgaataatcaacatatttttgagttgtcttcatttcttggtaatttgg 17627693  T
Q  127 tgtctataaaccttagtgattgtttgcatctcacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaatacac 226  Q
    ||||| ||||||||||| |||||  |   |||   |||| |||||||| |||||| ||||| || ||||||||||||  |||||| |||||||||| |||    
T  17627694 tgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcac 17627793  T
Q  227 atctattgggaaagagagt 245  Q
    |||||||||| ||||||||    
T  17627794 atctattggggaagagagt 17627812  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 1037280 - 1037399
Alignment:
Q  108 ttgtttcttgcggatttggtgtctataaaccttagtgattgtttgcat-ctcacagaattagccttgtattcactagttagaaactgtccttcactttgt 206  Q
    ||||||||||  |||||||||||||||||||||||||| || | |||| |||||||| |  ||| ||| | |||| ||||| || ||||||||||||  |    
T  1037280 ttgtttcttggtgatttggtgtctataaaccttagtgaatg-tagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttatt 1037378  T
Q  207 gagatcaaaatggaatacaca 227  Q
    ||| ||||||||||| |||||    
T  1037379 gaggtcaaaatggaacacaca 1037399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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