View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1213_high_14 (Length: 526)
Name: NF1213_high_14
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 9 - 472
Target Start/End: Complemental strand, 46525414 - 46524955
Alignment:
| Q |
9 |
agcagagacaagaggcaaacaacaactagccagcatagtgaaacaaaatttgaagcttgtttctctgcttagatatccggacattgttgtacaatacatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525414 |
agcagagacaagaggcaaacaacaactagccagcatagtgaaacaaaatttgaagcttgtttctctgcttagatatccggacattgttgtacaatacatt |
46525315 |
T |
|
| Q |
109 |
gttgcatgaaacaacttgcaccatatgcctaatgccaaatgtcactggtaatgtctaagaaactatgctatatttggttggcctcnnnnnnncaaaattg |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46525314 |
g---catgaaacaacttgcaccatatgcctaatgccaaatgtcactggtaatgtctaagaaactatgctatatttggttggcctcaaaaaaacaaaattg |
46525218 |
T |
|
| Q |
209 |
gattttggatctcttgtctttgttttttgtcttttggatgggataatattagggaactaagaataaatgaaaatggtaacgtttttcaactatatgggat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525217 |
gattttggatctcttgtctttgttttttgtcttttggatgggataatattagggaactaagaataaatgaaaatggtaacgtttttcaactatatgggat |
46525118 |
T |
|
| Q |
309 |
agttacaaaatacacaaagaacaatcaagtgtcatgtccctttcacttgcttcacacaacccatgtgaattatttgaggcacatttgcatgataatattg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525117 |
agttacaaaatacacaaagaacaatcaagtgtcatgtccctttcacttgcttcacacaacccatgtgaattatttgaggcacatttgcatgataatattg |
46525018 |
T |
|
| Q |
409 |
ttgttaaattaaatgaatgaatattggtaaaacgagagttaatagtgttgttatttgaatggac |
472 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525017 |
ttgttaaatt-aatgaatgaatattggtaaaacgagagttaatagtgttgttatttgaatggac |
46524955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 526
Target Start/End: Complemental strand, 46524935 - 46524903
Alignment:
| Q |
494 |
acaatatttgaatggacgttaagaggcattaat |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46524935 |
acaatatttgaatggacgttaagaggcattaat |
46524903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University