View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_17 (Length: 504)
Name: NF1213_high_17
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 30 - 404
Target Start/End: Original strand, 43102095 - 43102469
Alignment:
| Q |
30 |
aaacattgaccaacatcgtgatcatccccaaaagtatgtttgctaatatttgagttttgtccaagttcatcgatgtttggagttggagaccaaaatcctt |
129 |
Q |
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| T |
43102095 |
aaacattgaccaacatcgtgatcatccccaaaagtatgtttgctaatatttgagttttgtccaagttcatcgatgtttggagttggagaccaaaatcctt |
43102194 |
T |
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| Q |
130 |
acagtttgtttttaagttacgtttatattgtattgttatcatttatgttatgttttgtgactgtgaaccacaactaaaaatgaacaacaatcacgtgtgt |
229 |
Q |
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| T |
43102195 |
acagtttgtttttaagttacgtttatattgtattgttatcatttatgttatgttttgtgaccgtgaaccgcaactaaaaatgaacaacaatcacgtgtgt |
43102294 |
T |
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| Q |
230 |
tcattcataacacgttacattggatatgaatgactcattattttttgttcgtaaattcaaactatattgttcttaaacggtgacattgttgttaaaaatt |
329 |
Q |
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| T |
43102295 |
tcattcataacgcgttacattggacatgaatgactcattattttttgttcgtaaattcaaactatattgctcttaaacggtgacattgttgttaaaaatt |
43102394 |
T |
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| Q |
330 |
aggtactctaattttaacacttttgaatttaggaatttaaattaaaagaagtgaaagaagaaagaaattgaggat |
404 |
Q |
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| T |
43102395 |
aggtactctaattttaacacttttgaatttaggaatttaaattaaaagaagtgaaagaagaaagaaattgaggat |
43102469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 43102477 - 43102513
Alignment:
| Q |
446 |
taagattaatgttatgtgtgtttattttaatgatgat |
482 |
Q |
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| T |
43102477 |
taagattaatgttatgtgtgtttattttaatgatgat |
43102513 |
T |
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