View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_20 (Length: 478)
Name: NF1213_high_20
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 207 - 473
Target Start/End: Complemental strand, 6515205 - 6514939
Alignment:
| Q |
207 |
attgttagtcattatttatttaccatgaactcattgttgtatttatacattacttgatcaatgaaaatagtgtgtttcaaattatctttatttaagctgt |
306 |
Q |
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| T |
6515205 |
attgttagtcattatttatttaccataaactcattgttgtatttatacattacttgatcaatggaaatattgtgcttcaaattatctttatttaagctct |
6515106 |
T |
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| Q |
307 |
aggctaaatgcatcatgcgctcatttgaatgtactatatcagaactttaagttgtgttttaaattgatcctttatatcatacaacatttatatcattacc |
406 |
Q |
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| T |
6515105 |
aggctaaatgcatcacgcgttcatttgaatgtactatatcaaaactttaagttgtgttttaaattggtcctttatatcatacaacatttgtatcattacc |
6515006 |
T |
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| Q |
407 |
cttttcatctaattctgttaaagagtgcttacatgtcaacttgatgcttatgtggctctgtggtgct |
473 |
Q |
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| T |
6515005 |
cttttcatctaattctgttaaagagtgcttacatgtcaacttgatgcttatgtggctttttggtgct |
6514939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 6515327 - 6515231
Alignment:
| Q |
96 |
ttcaccaaatatctttctccaccataaatacaaccaacatgtgtcacacaagctctacaacatattaagtggaaacaagctctacaatatttcttac |
192 |
Q |
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| T |
6515327 |
ttcaccaaatatctttctccaccataaatacaaccaacatgtgtcacacaagctctacaacatattaagtggaaacaagctctacaatatttcttac |
6515231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 6515584 - 6515510
Alignment:
| Q |
30 |
actaagactcattccatgaatattcgtggaaaagctgatattttcaaactcactaaactattttcattcaccaaa |
104 |
Q |
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| T |
6515584 |
actaagactcattccatgaatactcgtggaaaagctgatcttttcaaactcactaaactcttttcattcaccaaa |
6515510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 49819797 - 49819737
Alignment:
| Q |
237 |
tcattgttgtatttatacattacttgatcaatgaaaatagtgtgtttcaaattatctttat |
297 |
Q |
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| T |
49819797 |
tcattgttgtatttatacactacttgatcaatggaaatggtgtgcttcgaatcatctttat |
49819737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 19732211 - 19732096
Alignment:
| Q |
34 |
agactcattccatgaatattcgtggaaaagctgatattttcaaactcactaaactattttcattcaccaaatatctttctccaccataaatacaaccaac |
133 |
Q |
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|||||||||||||||| | |||||||||| ||| ||||||||||| | ||||| || ||| | |||||||||| || | ||||| ||| ||||||| |
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| T |
19732211 |
agactcattccatgaacactcgtggaaaatctggtattttcaaaccaaagaaacttttctcagttaccaaatatcctttgcaaccatctatagaaccaac |
19732112 |
T |
|
| Q |
134 |
atgtgtcacacaagct |
149 |
Q |
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||||||| |||||||| |
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| T |
19732111 |
atgtgtctcacaagct |
19732096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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