View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_21 (Length: 475)
Name: NF1213_high_21
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 70 - 440
Target Start/End: Original strand, 30484476 - 30484847
Alignment:
| Q |
70 |
aataatatcgttacctttagcaatttcaaaagctagagtgggtacataaattccagcataagactccccagaaacataaaatggattagtctggaattct |
169 |
Q |
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| T |
30484476 |
aataataacgttacctttagcaatttcaaaagctagagtgggtacataaattccagcataagactccccagaaacataaaatggattagtctggaattct |
30484575 |
T |
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| Q |
170 |
ggaaattgctcaaaccactgacaagaaagnnnnnnnnn-gtatttttgtcttaggtataattgtgacaagaaagctaataatgaagattaattaacttga |
268 |
Q |
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| T |
30484576 |
ggaaattgctcaaaccactgacaagaaagaaaaaaaaaagtatttttgtcttaggtataattgtgacaagaaagctaataatgaagattaattaacttga |
30484675 |
T |
|
| Q |
269 |
tcatatttctatcctttcaaatcaaatgttaaatcttatttaaagtggcaattgtttctcttcttggaagtacctttaagaggaaagcatgagtatcaga |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30484676 |
tcatatttctatcctttcaaatcaaatgttaaatcttatttgaagtggcaattgtttctcttcttggaagtacctttaagaggaaagcatgagtatcaga |
30484775 |
T |
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| Q |
369 |
agcagtttgtaggtccccagttatgtaattgcttatgttatttgagtaagagaagccaacgccagttggtga |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30484776 |
agcagtttgtaggtccccagttatgtaattgcttatgttatttgagtaagagaagccaacgccagttggtga |
30484847 |
T |
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