View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1213_high_23 (Length: 455)
Name: NF1213_high_23
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_23 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 65 - 455
Target Start/End: Original strand, 40345486 - 40345873
Alignment:
| Q |
65 |
attatttaaggacctgtaaatacttgctgaaagaaatttaatctctttgttgcagcaatcgagatctttccatgatccttgacgctcttctcaaaacaaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40345486 |
attatttaaggacctgtaaatacttgctgaaagaaatttaatctctttgttgcagcaatcgagatctttccatgatccttgacgctcttctcaaaacaaa |
40345585 |
T |
|
| Q |
165 |
atctagagctgtgctgaatgatataattagtaaaaatggtaatctatacttgctttgaatttaatgaaaattttctcctatttatcaggaacgttagacc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40345586 |
atctagagctgtgctgaatgatataattagtaaaaatggtaatctatacttgctttgcatttaatgaaaattttctcccatttatcaggaacgttagacc |
40345685 |
T |
|
| Q |
265 |
catgatgacacctttggctgtgctgcaaagtaataactatagtattggctttcaggtttacagatgttgcataagatcatgaagcagtacaggcaagact |
364 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40345686 |
c---atgacacctttggttgtgccgcaaagtaataactatagtattggctttcaggtttacagatgttgcataagatcatgaagcagtacaggcaagact |
40345782 |
T |
|
| Q |
365 |
tcnnnnnnnttccaatactacgaaagcttcttaaggtacttagatgggaagctactcatattttagttctttgttagcttcattttttcat |
455 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40345783 |
tcaaaaaaattccaatactacgaaagcttcttaaggtacttagatgggaagctactcatattttagttctttgttagcttcattttttcat |
40345873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University