View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_28 (Length: 429)
Name: NF1213_high_28
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 29 - 411
Target Start/End: Original strand, 75259 - 75641
Alignment:
| Q |
29 |
ataagcgttaaattttagtttagacatttttgaacacaattcagacatgaacacaggtgtcatatttgcatatgtcatggacatcttatgaatatgtcat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75259 |
ataagcgttaaattttagtttagacatttttgaacacaattcagacatgaacacaggtgtcatatttgcatatgtcatggacatcttatgaatatgtcat |
75358 |
T |
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| Q |
129 |
ggacatacacatgcatgtactaataccagtgtatccatgactagtttatataacagaaagtacctttccatcagcatatttgggacgataaacaggtcca |
228 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
75359 |
ggacatacatatgcatgtactaataccagtgtatccatgactagtttatataacagaaagtacctttccatcagcatatttggcacgataaacaggtcca |
75458 |
T |
|
| Q |
229 |
atggatccttcaccaagaagtcggcctgaagcaaagttagcagtaccagtttgcaactcccccaatgaaaaagcagtacagcggattgatgcgctttttc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75459 |
atggatccttcaccaagaagtcggcctgaagcaaagttagcagtaccagtttgcaactcccccaatgaaaaagcagtacagcggattgatgcgctttttc |
75558 |
T |
|
| Q |
329 |
tagaatttagacgatttgcaaactcattgtcattaaagttttggacacaatcagagactgatgacctaacactaactgatgga |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75559 |
tagaatttagacgatttgcaaactcattgtcattaaagttttggacacaatcagagactgatgacctaacactaactgatgga |
75641 |
T |
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