View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_29 (Length: 425)
Name: NF1213_high_29
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 164 - 393
Target Start/End: Complemental strand, 37814529 - 37814304
Alignment:
| Q |
164 |
ttaaaactatatttaatctatcaatgcccatattttctttatggcatttacaacaatgtacttaaaattgatattttttaactccaaaaaacttatgaaa |
263 |
Q |
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| T |
37814529 |
ttaaaactatatttaatctatcaatgcccatattttctttatggcatttacaacaatgtacttaaaattgatattttttaactccaaaaaacttatgaaa |
37814430 |
T |
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| Q |
264 |
ttcaattagtgtgattttgggagtggagggatatttgtaggagtataagataaatttttcttcgtgtactataagtaagtatagctctgcggagcacacg |
363 |
Q |
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| T |
37814429 |
ttcaattagtgtgattttgggagtggagggatatttgtaggagtataagataaatttttcttcgtgtagta----taagtatagctctgcggagcacacg |
37814334 |
T |
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| Q |
364 |
ccaagtttacagaagaaatccatctttgta |
393 |
Q |
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| T |
37814333 |
ccaagtttacagaagaaatccatctttgta |
37814304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 37814608 - 37814555
Alignment:
| Q |
94 |
cctatatttatgttataatatctgcatttaaaaaattgaaatatcacttttgat |
147 |
Q |
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| T |
37814608 |
cctatatatatgttataatatctgcatttaaaaaattgaaatatcacttttgat |
37814555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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