View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_3 (Length: 736)
Name: NF1213_high_3
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 164 - 697
Target Start/End: Complemental strand, 28253113 - 28252580
Alignment:
| Q |
164 |
ggaatgcactccaggagaaccgctatggatgagaaagaaaataagcaattcaacttggaaccaagccatagccataaactgatgtcaaagtcacaagaca |
263 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28253113 |
ggaatgcactccaggagaacagctacggatgagaaagaaaataagcaattcaatttggaaccaagccatagccataaactgatgtcaaagtcacaataca |
28253014 |
T |
|
| Q |
264 |
aaaataaatgagatgtttcatccatctaataacacaacacacaaattgaaaccatcatacaatctcgaatcttaaaattttcatcggttaggagcttttg |
363 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28253013 |
aaaataaatgagaagtttcatccatctaataacacaacacacaaattgaaaccatcatacaatctcgaatcttaaaattttcatcggttaggagcttttg |
28252914 |
T |
|
| Q |
364 |
atgcattaaacgcaaaaacgaaaaaggagtaagaaggcggaatgcaaaaattccaaataatagtgctttagccaagagtatctatgttttcatttattag |
463 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28252913 |
atgcattaaacgcaaaaacgaaaaaggagtgcgaaggcggaatgcaagaattccaaataatagtgctttagcgaagagtatctatgttttcatttattag |
28252814 |
T |
|
| Q |
464 |
gtcttagacgaactggcatcaagctgtttgaactatgtggttgtataaactttacaattctagtatttatttagaattacttgtgcttaatgcgttttgt |
563 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28252813 |
gtcttagacgaacttatatcaagctatttgaactatgtggttgtataaactttacaattctagtatttatttagaattacttgtgcttaatgcgttttgt |
28252714 |
T |
|
| Q |
564 |
atcttgatcaaatatgaaatgaacttaaatctcaattgactactagccatagctattgaatttaatctagtaattttgttcaatctaacagactttagag |
663 |
Q |
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| T |
28252713 |
atcttgatcaaatatgaaatgaacttaaatctcaattgactactagtcatagctattgaatttaatctagtaattttgttcaatctaacagactttagag |
28252614 |
T |
|
| Q |
664 |
gtattgggttgttaggttgtgagaactcacctaa |
697 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
28252613 |
gtattgggttgttaggttgtgagaactcacctaa |
28252580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 426 - 652
Target Start/End: Original strand, 3296856 - 3297098
Alignment:
| Q |
426 |
gtgctttagccaagagtatctatgttttcatttattaggtcttagacgaactggcatcaagctgtttgaactatgtggttgtataaact----------- |
514 |
Q |
| |
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|||||||||||| ||||||||| ||| ||| ||||||||||||| || || | ||||| || ||||||| ||||| ||||||||||| |
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| T |
3296856 |
gtgctttagccatgagtatctaattttctattgattaggtcttagatgagcttgtatcaaactctttgaaccatgtgattgtataaactctactcaatac |
3296955 |
T |
|
| Q |
515 |
--ttacaattctagtatttatttagaattacttgtgctta---atgcgttttgtatcttgatcaaatatgaaatgaacttaaatctcaattgactactag |
609 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
3296956 |
aattacaattctagttgttattcagaattacttgtgcttattaatgctttttgtaacttgatcaattatgaaatggacttaaatctcaattgactactag |
3297055 |
T |
|
| Q |
610 |
ccatagctattgaatttaatctagtaattttgttcaatctaac |
652 |
Q |
| |
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| || || |||||||| | ||||||||| |||||||| |||| |
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| T |
3297056 |
tcgtaactgttgaatttgacctagtaattatgttcaatttaac |
3297098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 519 - 645
Target Start/End: Original strand, 21599271 - 21599397
Alignment:
| Q |
519 |
aattctagtatttatttagaattacttgtgcttaatgcgttttgtatcttgatcaaatatgaaatgaacttaaatctcaattgactactagccatagcta |
618 |
Q |
| |
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||||||||| ||||| | ||||||||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||| || |||| ||||| | |
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| T |
21599271 |
aattctagttgttattcaaaattacttgtgtttaatgctttttgtatcttgatcaaatatgaaattagcttaaatctcaattaacaactaagcatagttg |
21599370 |
T |
|
| Q |
619 |
ttgaatttaatctagtaattttgttca |
645 |
Q |
| |
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|||||||| ||||||||||| |||||| |
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| T |
21599371 |
ttgaatttgatctagtaattatgttca |
21599397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 519 - 645
Target Start/End: Original strand, 4288028 - 4288155
Alignment:
| Q |
519 |
aattctagtatttatttagaattacttgtgcttaatgcgtttt-gtatcttgatcaaatatgaaatgaacttaaatctcaattgactactagccatagct |
617 |
Q |
| |
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||||||||| |||||||| |||| ||| ||||||||| |||| ||||||| || |||||| || |||| |||||||||||||||||| ||||| | | |
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| T |
4288028 |
aattctagtttttatttaaaatttcttatgcttaatgtttttttgtatctttattaaatataaattgaatttaaatctcaattgactattagccctgcat |
4288127 |
T |
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| Q |
618 |
attgaatttaatctagtaattttgttca |
645 |
Q |
| |
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||||||||| | ||||| ||||||||| |
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| T |
4288128 |
gttgaatttattttagtatttttgttca |
4288155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 533 - 652
Target Start/End: Complemental strand, 26157120 - 26157001
Alignment:
| Q |
533 |
tttagaattacttgtgcttaatgcgttttgtatcttgatcaaatatgaaatgaacttaaatctcaattgactactagccatagctattgaatttaatcta |
632 |
Q |
| |
|
|||||||||| ||| | |||||| |||| ||||||||||| |||| ||||||| |||||| ||||||||||||||| ||||| | ||||||| ||||| |
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| T |
26157120 |
tttagaattatttgcgtgtaatgctttttatatcttgatcacatattaaatgaatttaaatatcaattgactactagtcatagttgttgaattcgatcta |
26157021 |
T |
|
| Q |
633 |
gtaattttgttcaatctaac |
652 |
Q |
| |
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|||||||||| || ||||| |
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| T |
26157020 |
ataattttgtttaacctaac |
26157001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 653
Target Start/End: Complemental strand, 1535203 - 1535093
Alignment:
| Q |
542 |
acttgtgcttaatgcgttttgtatcttgatcaaatatgaaatgaacttaaatctcaattgactactagccatagctattgaatttaatctagtaattttg |
641 |
Q |
| |
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||||| ||||||||| || ||||||||||| |||||| | ||||||||||||| ||||||| | |||| ||||| | |||||||| | ||||||| | | |
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| T |
1535203 |
acttgagcttaatgctttgtgtatcttgataaaatat-atatgaacttaaatcccaattgatttctagtcatagttgttgaatttgacctagtaaatcta |
1535105 |
T |
|
| Q |
642 |
ttcaatctaaca |
653 |
Q |
| |
|
|||||||||||| |
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|
| T |
1535104 |
ttcaatctaaca |
1535093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 652
Target Start/End: Original strand, 4753639 - 4753742
Alignment:
| Q |
549 |
cttaatgcgttttgtatcttgatcaaatatgaaatgaacttaaatctcaattgactactagccatagctattgaatttaatctagtaattttgttcaatc |
648 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||| ||| ||||||| |||| ||| ||||||| || | |||||||| ||||| |||| || ||||| | |
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| T |
4753639 |
cttaatgccttttatatcttgatcacatatgaattgatcttaaatatcaagtgattactagcattaagtgttgaatttgatctaataatattattcaacc |
4753738 |
T |
|
| Q |
649 |
taac |
652 |
Q |
| |
|
|||| |
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|
| T |
4753739 |
taac |
4753742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 588
Target Start/End: Original strand, 18547264 - 18547334
Alignment:
| Q |
518 |
caattctagtatttatttagaattacttgtgcttaatgcgttttgtatcttgatcaaatatgaaatgaact |
588 |
Q |
| |
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|||||||||||||||| | || ||||||| ||||||| |||||||||||||||| |||| |||| |||| |
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|
| T |
18547264 |
caattctagtatttatacaatataacttgtgtttaatgctttttgtatcttgatcacatataaaataaact |
18547334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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