View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_34 (Length: 414)
Name: NF1213_high_34
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 39 - 398
Target Start/End: Complemental strand, 35322569 - 35322210
Alignment:
| Q |
39 |
aaatcccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacac |
138 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35322569 |
aaatcccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacctcacagtactttctggtgcacacac |
35322470 |
T |
|
| Q |
139 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35322469 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaattaaattgtcctctt |
35322370 |
T |
|
| Q |
239 |
tctggtggtgacactaatttagcacctcttgatactctcactccaacaagttttgacaacaattactataaaaaccttgttgcaagcaaaggtcttttcc |
338 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35322369 |
tctggtggtgacaccaatttagcacctcttgacactctcactccaacaaattttgacaacaattactataaaaatcttgttgcaagcaaaggtcttttcc |
35322270 |
T |
|
| Q |
339 |
agtctgatcaagctcttttcaataatgggtctcaagataatttggttaggagttatagta |
398 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35322269 |
attctgatcaagctcttttcaataatgggtctcaagataatttggttaggagttatagta |
35322210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 39 - 398
Target Start/End: Complemental strand, 35307568 - 35307209
Alignment:
| Q |
39 |
aaatcccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacac |
138 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35307568 |
aaatcccttcaccattttctgacctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacctcacagtactttctggtgcacacac |
35307469 |
T |
|
| Q |
139 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35307468 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctt |
35307369 |
T |
|
| Q |
239 |
tctggtggtgacactaatttagcacctcttgatactctcactccaacaagttttgacaacaattactataaaaaccttgttgcaagcaaaggtcttttcc |
338 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307368 |
tctggtggtgacaccaatttagcaccacttgatactctcactccaacaagttttgataacaattactataaaaaccttgttgcaagcaaaggtcttttcc |
35307269 |
T |
|
| Q |
339 |
agtctgatcaagctcttttcaataatgggtctcaagataatttggttaggagttatagta |
398 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35307268 |
attctgatcaagctcttttcaataatgggtctcaagataatttggttaggagttatagta |
35307209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 91 - 398
Target Start/End: Complemental strand, 35311862 - 35311552
Alignment:
| Q |
91 |
caagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaacc |
190 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| |
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|
| T |
35311862 |
caagggtctaactgcaagtgatctcacagtactttctggtgcacacaccataggccaaggagagtgtcgattgttcagaactcgcatatacaatgaaacc |
35311763 |
T |
|
| Q |
191 |
aacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctttctggtgg---tgacactaatttagcacctcttgatactctcactccaacaa |
287 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| || ||| || ||||| ||| |||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
35311762 |
aacattgacacaaacttcgcaaccttaagaaaatccaactgttctttttctagtgacaatgacaccaatttagcaccacttgatactctcactccaacaa |
35311663 |
T |
|
| Q |
288 |
gttttgacaacaattactataaaaaccttgttgcaagcaaaggtcttttccagtctgatcaagctcttttcaataatgggtctcaagataatttggttag |
387 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35311662 |
gttttgacaacaattattataaaaaccttgttgcaagcaaaggtctattccattctgatcaagtccttttcaataatgggtctcaagataatttggttag |
35311563 |
T |
|
| Q |
388 |
gagttatagta |
398 |
Q |
| |
|
||||||||||| |
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|
| T |
35311562 |
gagttatagta |
35311552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 49 - 361
Target Start/End: Complemental strand, 35289760 - 35289448
Alignment:
| Q |
49 |
accattttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaa |
148 |
Q |
| |
|
||||| ||||||||| ||||| ||||| | ||||||| | |||| ||| |||| || |||||| || || ||||||||||||||||||||||| ||| |
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|
| T |
35289760 |
accatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttactgtcctttctggtgcacacaccataggtcaa |
35289661 |
T |
|
| Q |
149 |
ggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctttctggtggtg |
248 |
Q |
| |
|
| ||| || ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
35289660 |
gcagaatgtcaatttttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaaccttaagaaaatcaaattgtcctacttctggtggtg |
35289561 |
T |
|
| Q |
249 |
acactaatttagcacctcttgatactctcactccaacaagttttgacaacaattactataaaaaccttgttgcaagcaaaggtcttttccagtctgatca |
348 |
Q |
| |
|
||| ||||| |||||||||||| || || ||||| | ||||||||||||||||||||| |||||||||| | ||||| ||| | || |||||||| |
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|
| T |
35289560 |
acataaatttggcacctcttgattctgtctctccagttacttttgacaacaattactataatgaccttgttgctaataaaggacttcttcattctgatca |
35289461 |
T |
|
| Q |
349 |
agctcttttcaat |
361 |
Q |
| |
|
||||||||||||| |
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|
| T |
35289460 |
agctcttttcaat |
35289448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 308
Target Start/End: Complemental strand, 35280425 - 35280156
Alignment:
| Q |
39 |
aaatcccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacac |
138 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||| ||||||||| | |||| ||| |||| ||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
35280425 |
aaatcccttcaccagcttctgacctatccacactcactaaaatgtttcaaaacaaaggtctaacattaagagaccttacagtcctttctggtgcacacac |
35280326 |
T |
|
| Q |
139 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctt |
238 |
Q |
| |
|
||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||| |
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|
| T |
35280325 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
35280226 |
T |
|
| Q |
239 |
tctggtggtgacactaatttagcacctcttgatactctcactccaacaagttttgacaacaattactata |
308 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||| || || |||| | ||||||||||||||| |||| |
|
|
| T |
35280225 |
tctggcggtgacacaaatttggctcctcttgattctgtctctcctgttacttttgacaacaattattata |
35280156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 109 - 361
Target Start/End: Complemental strand, 35275588 - 35275336
Alignment:
| Q |
109 |
tgacctcacagtactttctggtgcacacaccataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaacttt |
208 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |
|
|
| T |
35275588 |
tgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttg |
35275489 |
T |
|
| Q |
209 |
gcaaccttaaggaaatcaaattgtcctctttctggtggtgacactaatttagcacctcttgatactctcactccaacaagttttgacaacaattactata |
308 |
Q |
| |
|
|| |||||||| ||| |||||| ||| |||||||||||||| ||||||||||| ||||| || |||||||||| | |||||||||||||| |||| |
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|
| T |
35275488 |
gctaccttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcaccctttgattctgtcactccaactaaatttgacaacaattattata |
35275389 |
T |
|
| Q |
309 |
aaaaccttgttgcaagcaaaggtcttttccagtctgatcaagctcttttcaat |
361 |
Q |
| |
|
| ||||| |||| | ||||||||| | || |||||||||| |||||||||| |
|
|
| T |
35275388 |
aggaccttattgctaataaaggtcttctacattctgatcaagttcttttcaat |
35275336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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