View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_38 (Length: 403)
Name: NF1213_high_38
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 8176847 - 8176564
Alignment:
| Q |
30 |
tcaaggtatacatagctatc----agtaaaaatataattttgactgataaatgttaattgtgttgatccatttatataatatggctggcaggaatgaaag |
125 |
Q |
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| T |
8176847 |
tcaaggtatacatagctatatatgagtaaaaatataattttgactgataaatgctaattgtgttgatccatttatataatatggctg-caggaatgaaag |
8176749 |
T |
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| Q |
126 |
tgtatagcactgatgaaaaggaattgattatggaactatcaatgaaatgggctgggaatcctaacattataattgcagttaaagcatttggattgcgagc |
225 |
Q |
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| T |
8176748 |
tgtatagcactgatgaaaaggaattgattatggaactatcaatgaaatgggctgggaatcctaacattatagttgcagttaaagcatttggattgcgagc |
8176649 |
T |
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| Q |
226 |
aaccgttcaggtatttctccggactcaaatataaacnnnnnnngaggtcatatttttcctagtaaatgttattattctgaaatttc |
311 |
Q |
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| T |
8176648 |
aaccgttcaggtatttctccggactcaaatataaacaaaaaaagaggtcata-ttttcctagtaaatgttattattctgaaatttc |
8176564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 8176494 - 8176432
Alignment:
| Q |
331 |
aaatgattgcaggttgttgatttgcaagtgtttgcttctccgcgcataatgttgaagcctttg |
393 |
Q |
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| T |
8176494 |
aaatgattgcaggttgttgatttgcaagtgtttgcttctccgcgcataatgttgaagcctttg |
8176432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 18846513 - 18846447
Alignment:
| Q |
104 |
atatggctggcaggaatgaaagtgtatagcactgatgaaaaggaattgattatggaactatcaatgaa |
171 |
Q |
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| T |
18846513 |
atatggctg-caggaatcaaagtgtatagcgctgatgaaaaggaattgattatgcaactatcaatgaa |
18846447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 27793080 - 27793204
Alignment:
| Q |
114 |
caggaatgaaagtgtatagcactgatgaaaaggaattgattatggaactatcaatgaaatgggctgggaatcctaacattataattgcagttaaagcatt |
213 |
Q |
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||||||||||||| ||| |||||||| ||||| ||||||||||| | || || ||||||||||| ||||| || | | ||||| ||||| ||||| |
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| T |
27793080 |
caggaatgaaagtttatgtgactgatgagaaggagttgattatggagccttctataaaatgggctggaaatcccaatgtcaccattgctgttaaggcatt |
27793179 |
T |
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| Q |
214 |
tggattgcgagcaaccgttcaggta |
238 |
Q |
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| T |
27793180 |
tgggttgaaagcaaccgttcaggta |
27793204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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