View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_39 (Length: 401)
Name: NF1213_high_39
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 2468358 - 2468022
Alignment:
| Q |
30 |
cattatgctataagcgcttaattaaagtgtatatccaaacaagacctaattaaatgaccccaactacagcagaaataacaaactaacagagttgacattt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2468358 |
cattatgctataagcgcttaattaaagtgtatatccaaacaagacctaaataaatgaccgcaactacagcagaaataacaaactaacagagttgacattt |
2468259 |
T |
|
| Q |
130 |
tcatttgtaataatattggtattggtaatcttaaattaaaattgtaattattaaagtaacagggagattttcctaactgaagcaaaacctgtgcttaagt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468258 |
tcatttgtaataatattggtattggtaatcttaaattaaaattgtaattattaaagtaacagggagattttcctaactgaagcaaaacctgtgcttaagt |
2468159 |
T |
|
| Q |
230 |
caccgacatctccaaatataggaattgaattcaaaccagtagcaaaatcagaagcagcaactgccggaaaagcatcttgaagtgcgaagaacgcagagaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2468158 |
caccgacatctccaaatataggaattgaattcaaaccagtagcaaaatcagaagcagcaactgccggaaaagcatcttgaagtgcgaagaacgcggagaa |
2468059 |
T |
|
| Q |
330 |
cagcataaacttcaaaactgtcatggatgcatcatca |
366 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2468058 |
cagcataaacttcaaaactgtcatggatgcatcatca |
2468022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 29115364 - 29115402
Alignment:
| Q |
32 |
ttatgctataagcgcttaattaaagtgtatatccaaaca |
70 |
Q |
| |
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||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
29115364 |
ttatgctataagcgcgtaattaaagtgtttatccaaaca |
29115402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 39257537 - 39257577
Alignment:
| Q |
32 |
ttatgctataagcgcttaattaaagtgtatatccaaacaag |
72 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
39257537 |
ttatgctataagcgcttaattaagttgtttatccaaacaag |
39257577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 14316970 - 14317012
Alignment:
| Q |
32 |
ttatgctataagcgcttaattaaagtgtatatccaaacaagac |
74 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
14316970 |
ttatgctataagcgcttaattaatttgtttatccaaacaagac |
14317012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 49587077 - 49587122
Alignment:
| Q |
32 |
ttatgctataagcgcttaattaaagtgtatatccaaacaagaccta |
77 |
Q |
| |
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|||||||| ||||||||||||||| ||| |||||||||||| |||| |
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|
| T |
49587077 |
ttatgctagaagcgcttaattaaactgtttatccaaacaaggccta |
49587122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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