View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_40 (Length: 397)
Name: NF1213_high_40
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 31 - 388
Target Start/End: Original strand, 42020861 - 42021218
Alignment:
| Q |
31 |
taacatcttgttacaatgaacatgctattagagtatctgatttatattgttcaagaccttcagattcaatcattccaaaactcaataacctttcaattca |
130 |
Q |
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| T |
42020861 |
taacatcttgttacaatgaacatgctattagagtatctgatttatattgttcaagaccttcaaattcaatcattccaaaactcaataacctttcaattca |
42020960 |
T |
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| Q |
131 |
aaattcagttacttgcatatacaaactcaactttatctcaattcaacaacaatttctcatcacactaacttggaccaagaaactcattggacaaggtttc |
230 |
Q |
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| T |
42020961 |
aaattcagttacttgcatatacaaactcaactttatctcaattcaacaacaatttctcatcacactaacttggaccaagaaactcattggacaaggtttc |
42021060 |
T |
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| Q |
231 |
atcataaacatcacttctgattctgattatgtcaatgttttctcaaaattcaatggaaatcctcctctgttattgaaacagaacaaaggtactgatacgt |
330 |
Q |
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| T |
42021061 |
atcataaacatcacttctgattctgattatgtcaatgttttctcaaaattcaatggaaatcctcgtctattattgaaacagaacaaaggtactgatacgt |
42021160 |
T |
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| Q |
331 |
ttcaatatcaaaattttgaagtcaaagttttatgggatctttctgatgctaaggatga |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42021161 |
ttcaatatcaaaattttgaagtcaaagttttatgggatctttctgatgctaagtatga |
42021218 |
T |
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