View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_57 (Length: 311)
Name: NF1213_high_57
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_57 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 89 - 295
Target Start/End: Complemental strand, 44248211 - 44248005
Alignment:
| Q |
89 |
aggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgc |
188 |
Q |
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| T |
44248211 |
aggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgc |
44248112 |
T |
|
| Q |
189 |
aggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttgg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44248111 |
aggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatatttgg |
44248012 |
T |
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| Q |
289 |
aatgaga |
295 |
Q |
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||||||| |
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| T |
44248011 |
aatgaga |
44248005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 89 - 295
Target Start/End: Complemental strand, 11807129 - 11806923
Alignment:
| Q |
89 |
aggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgc |
188 |
Q |
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| T |
11807129 |
aggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgc |
11807030 |
T |
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| Q |
189 |
aggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttgg |
288 |
Q |
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| T |
11807029 |
aggagcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttgg |
11806930 |
T |
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| Q |
289 |
aatgaga |
295 |
Q |
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||||||| |
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| T |
11806929 |
aatgaga |
11806923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 97 - 295
Target Start/End: Original strand, 15284357 - 15284555
Alignment:
| Q |
97 |
gaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgcaggagctt |
196 |
Q |
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|||||||||| | ||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| |
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| T |
15284357 |
gaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgctggtgctt |
15284456 |
T |
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| Q |
197 |
atatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
295 |
Q |
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| T |
15284457 |
atatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
15284555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 139 - 295
Target Start/End: Complemental strand, 15287516 - 15287360
Alignment:
| Q |
139 |
gaggtgcttgatataacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatg |
238 |
Q |
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|||||| | ||| |||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| || | |||||||| ||| |
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| T |
15287516 |
gaggtgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatggagttccaaaatatg |
15287417 |
T |
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| Q |
239 |
tacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
295 |
Q |
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| T |
15287416 |
tacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
15287360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 15262931 - 15263066
Alignment:
| Q |
160 |
ttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcatt |
259 |
Q |
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|||||||| |||||||||||||||||| |||| ||||| |||||||||||||| || || || | ||||||||| |||| ||||||||||||||||||| |
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| T |
15262931 |
ttggcattgttgagaccagatggtcatccaggtgcttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcatt |
15263030 |
T |
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| Q |
260 |
ggtgcttgccaggacctatagatacttggaatgaga |
295 |
Q |
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|||| ||||| ||||||||||||||||||||||||| |
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| T |
15263031 |
ggtgtttgcctggacctatagatacttggaatgaga |
15263066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 295
Target Start/End: Complemental strand, 15256839 - 15256689
Alignment:
| Q |
145 |
cttgatataacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaa |
244 |
Q |
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|||||| |||| || |||||||| |||||||||||||||||| |||| |||||||| | |||||||||||||| || | |||||| | ||| || | |
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| T |
15256839 |
cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatgtacccttttccatttgccaatggtgttccagaacgtgtgcaga |
15256740 |
T |
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| Q |
245 |
atgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
295 |
Q |
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||||||||||||||||||| ||||| ||||||||||| || |||||||||| |
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| T |
15256739 |
atgattgtgttcattggtgtttgcctggacctatagacacatggaatgaga |
15256689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 295
Target Start/End: Complemental strand, 15265357 - 15265214
Alignment:
| Q |
152 |
taacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattg |
251 |
Q |
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||||||| ||||| || || ||||||||||||||| |||| |||||||||||||||||||||| ||| |||||| | | |||| ||||||||||| |
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| T |
15265357 |
taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttttccattctttaatggggttcaagaacatgtgcaaaatgattg |
15265258 |
T |
|
| Q |
252 |
tgttcattggtgcttgccaggacctatagatacttggaatgaga |
295 |
Q |
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|||||||||||| ||||| ||||| || ||||| |||||||||| |
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| T |
15265257 |
tgttcattggtgtttgcctggaccaattgatacatggaatgaga |
15265214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 98 - 295
Target Start/End: Original strand, 51383543 - 51383740
Alignment:
| Q |
98 |
aaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgcaggagctta |
197 |
Q |
| |
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|||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |
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| T |
51383543 |
aaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggagccta |
51383642 |
T |
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| Q |
198 |
tatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgaga |
295 |
Q |
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||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
51383643 |
catgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgccaggacctatagacacttggaatgaga |
51383740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 6554224 - 6554179
Alignment:
| Q |
244 |
aatgattgtgttcattggtgcttgccaggacctatagatacttgga |
289 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
6554224 |
aatgattgtgttcattggtgtttgccagggcctatagatacatgga |
6554179 |
T |
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