View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_6 (Length: 631)
Name: NF1213_high_6
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 14 - 603
Target Start/End: Original strand, 46894080 - 46894669
Alignment:
| Q |
14 |
agagtatagctccgtttgaatttgggtgtcgagagagacacatggtgaattggcatttgagtccaaaatgggatgaaagttgattttgcagtgaaatggg |
113 |
Q |
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| T |
46894080 |
agagtatagctccgtttgaatttgggtgtcgagagagacacatggtgaattggcgtttgagtccaaaatgggatgaaagttgattttgcagtgaaatggg |
46894179 |
T |
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| Q |
114 |
tgaatgggctaacccaacaacgccttgaacgttattgggtaagcccttttgggccaaaaaggaaggagcacaagagaagaggaaccgagggattgtaacc |
213 |
Q |
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| T |
46894180 |
tgaatgggctaacccaacaacgccttgaacgttattgggtaagcccttttgggccaaaaaggaaggagcacaagagaagaggaactgagggattgtaacc |
46894279 |
T |
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| Q |
214 |
attgggccgggcttaggcccgttaatggcgtagatagcgaggacatcttgagccagttcacccatagctgtttgttgagtgaccgggtttgcggacataa |
313 |
Q |
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| T |
46894280 |
attgggccgggcttaggcccattaatggcgtagatagcgaggacatcttgagccagttcacccatagctgtttgttgagtgaccgggtttgcggacataa |
46894379 |
T |
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| Q |
314 |
gcccacaggtgttgttatggcaaccgggtctgaaagaagagacacacgtgtgacacgtgtgagcattggctctggagcattgggttgaatggcaataggg |
413 |
Q |
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| T |
46894380 |
gcccacaggtgttgttatggcaaccgggtctgaaagaagagacacacgtgtgacatgtgtgagcattggctctggagcattgggttgaatggcaataggg |
46894479 |
T |
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| Q |
414 |
tgcttggtatgttgaggatgcgtagtgttgttcacagttgacccataagtgtttgccattgaggtcaaggagaactggaacttgcattaatggggttctt |
513 |
Q |
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| T |
46894480 |
tgcttggtatgttgaggatgcgtagtgttgttcacagttgacccataagtgtttgccattgaggtcaaggagaactggaacttgcattaaaggggttctt |
46894579 |
T |
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| Q |
514 |
ttgtggatgttggcccaatggagtccagttgaagcatcttgttgaactggtaaaaccaatagatttggttttggattggagtttggttgt |
603 |
Q |
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| T |
46894580 |
ttgtggatgttggcccaatggagtccagttgaagcatcttgttgaactggtaaaaccaatagatttggttttggattggagtttggttgt |
46894669 |
T |
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