View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_73 (Length: 273)
Name: NF1213_high_73
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_73 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 131 - 263
Target Start/End: Original strand, 11427705 - 11427837
Alignment:
| Q |
131 |
atggcagtaccactcatctaccaccattgtgtgccacaattaataataaaaattttggcataatccatgtcataccnnnnnnnnntaattgttcattctt |
230 |
Q |
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| T |
11427705 |
atggcagtaccactcatctaccaccattgtgtgccacaattaatgataaaaaatttggcataatccatgtcataccaaaaaaaaaaaattgttcattctt |
11427804 |
T |
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| Q |
231 |
tctctctctcagctcctctttcgctcacctttg |
263 |
Q |
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| T |
11427805 |
tctctctctcagctcgtctttctctcacctttg |
11427837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11427556 - 11427630
Alignment:
| Q |
1 |
agaatcgttatattcacatgttctgtttagccacatccattctatgaatctaatggtaatatatattatgtgagt |
75 |
Q |
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| T |
11427556 |
agaatcgttatattcacatgttttgtttagccgcatccattctatgaatctaatggtaatatatattatgtgagt |
11427630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 11431305 - 11431400
Alignment:
| Q |
9 |
tatattcacatgttctgtttagccacatccattctatgaatctaatggtaatatatattatgtgagtaggtcggtgttattctagggtttcaaata |
104 |
Q |
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| T |
11431305 |
tatattcacatgttttgtttaaccgcatccattttatgaatgtaatcttaatatatactgagtgagtatgttggtgttattccagggtttcaaata |
11431400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 24996341 - 24996408
Alignment:
| Q |
138 |
taccactcatctaccaccattgtgtgccacaattaataataaaaattttggcataatccatgtcatacc |
206 |
Q |
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| T |
24996341 |
taccattcatctaccacccttgtgtggcataattaataa-aaaaaaattggcataatccatgtgatacc |
24996408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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