View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_high_8 (Length: 607)
Name: NF1213_high_8
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 28602168 - 28601880
Alignment:
| Q |
30 |
actttcccatgcattttaatcctttgtttcatgtcaatgatgtaatggaacataactgtta----------gtatcatttgttggaaatgtcggggcttg |
119 |
Q |
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| T |
28602168 |
actttcccatgcattttaatcctttgtttcatgtcaatgatgtaatggaacataactgttaagataaatgagtatcatttgttggaaatgtcggggcttg |
28602069 |
T |
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| Q |
120 |
ggtgattagagtgaagtttaaaatttaaaatacatcgttcaaaattataatcgtgtgt--tattatcgtgtatgagactgtgattaattcgaataagaca |
217 |
Q |
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| T |
28602068 |
ggtgattagagtgaagtttaaaatttaaaatacatcgttcaaaattataatcgtgtgtgttattatcgtgtatgagactgtgattaattcgaataagaca |
28601969 |
T |
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| Q |
218 |
gaagagttgtgttatgtcttgggctttgataattattttattgtctaccgtgaatgttgcggtgacgatgtggctttgtgttggcgtaa |
306 |
Q |
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| T |
28601968 |
gaagagttgtgttatgtcttgggctttgataattattttattgtctactgtgaatgttgcgatgacgatgtggctttgtgttggtgtaa |
28601880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 411 - 534
Target Start/End: Complemental strand, 28601878 - 28601755
Alignment:
| Q |
411 |
tcatgaaatttgttgagacaacattcaaaaacttctcaattttcttgttatatatagggaatttcaatgatattctctcatttgatgagaagaaaggaag |
510 |
Q |
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| T |
28601878 |
tcatggaatttgttgagacaacattcaaaaacttctcaattttcttgttatatatagggaatttcaatgatattctctcatttgatgagaagaaaggaag |
28601779 |
T |
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| Q |
511 |
agctgaccgcatcaattagttgat |
534 |
Q |
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| T |
28601778 |
agttgatcgcatcaattagttgat |
28601755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 530 - 607
Target Start/End: Complemental strand, 28601716 - 28601638
Alignment:
| Q |
530 |
ttgatattcagatgaagg-atacccgtgcacttggttcaaaagtcttggaatgaatctgatagtagaagggaaactaga |
607 |
Q |
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| T |
28601716 |
ttgatattcagatggagggatacccgtgcacttggttcaaaagtcttggaatgaatctgatagtagaagggaaactaga |
28601638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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