View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_high_83 (Length: 251)

Name: NF1213_high_83
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_high_83
NF1213_high_83
[»] chr6 (32 HSPs)
chr6 (29-251)||(24941683-24941905)
chr6 (29-251)||(24934150-24934372)
chr6 (33-245)||(21160923-21161135)
chr6 (29-225)||(29950191-29950387)
chr6 (29-225)||(30149036-30149232)
chr6 (29-247)||(24739489-24739707)
chr6 (29-199)||(15727462-15727632)
chr6 (126-231)||(29954012-29954117)
chr6 (29-247)||(30578062-30578280)
chr6 (33-247)||(29881922-29882136)
chr6 (33-247)||(29909078-29909292)
chr6 (35-251)||(30153983-30154199)
chr6 (33-248)||(24272245-24272460)
chr6 (33-203)||(29834746-29834916)
chr6 (33-203)||(29866180-29866350)
chr6 (33-247)||(29928760-29928974)
chr6 (42-213)||(16702325-16702496)
chr6 (33-228)||(24264050-24264245)
chr6 (33-248)||(29886783-29886998)
chr6 (86-241)||(30028631-30028786)
chr6 (33-231)||(29902759-29902957)
chr6 (82-227)||(25450625-25450770)
chr6 (33-178)||(29358277-29358422)
chr6 (34-203)||(29897613-29897777)
chr6 (29-247)||(15715280-15715499)
chr6 (34-114)||(30132332-30132412)
chr6 (84-191)||(29894096-29894203)
chr6 (32-115)||(29905258-29905341)
chr6 (84-178)||(29073319-29073413)
chr6 (84-178)||(29105892-29105986)
chr6 (33-107)||(29348896-29348970)
chr6 (36-107)||(30134781-30134850)
[»] chr4 (1 HSPs)
chr4 (29-247)||(44262887-44263105)
[»] scaffold0110 (1 HSPs)
scaffold0110 (33-251)||(44167-44385)
[»] scaffold0308 (1 HSPs)
scaffold0308 (29-230)||(8499-8700)
[»] scaffold0014 (4 HSPs)
scaffold0014 (30-247)||(139785-140002)
scaffold0014 (78-230)||(105081-105233)
scaffold0014 (80-247)||(136861-137028)
scaffold0014 (33-213)||(121769-121949)
[»] chr3 (4 HSPs)
chr3 (29-178)||(24226376-24226525)
chr3 (29-230)||(16350554-16350755)
chr3 (80-242)||(11990804-11990966)
chr3 (54-248)||(24219554-24219748)
[»] scaffold0654 (1 HSPs)
scaffold0654 (29-247)||(1514-1732)
[»] scaffold0019 (1 HSPs)
scaffold0019 (29-247)||(126417-126635)
[»] chr1 (4 HSPs)
chr1 (80-241)||(19489743-19489904)
chr1 (80-163)||(17250884-17250967)
chr1 (80-242)||(41315761-41315923)
chr1 (159-248)||(10129623-10129712)
[»] chr5 (1 HSPs)
chr5 (84-232)||(20888091-20888237)
[»] scaffold0429 (1 HSPs)
scaffold0429 (80-247)||(5683-5850)
[»] scaffold0051 (2 HSPs)
scaffold0051 (30-247)||(43582-43799)
scaffold0051 (30-213)||(50799-50982)
[»] scaffold0086 (1 HSPs)
scaffold0086 (33-213)||(31603-31783)
[»] chr7 (2 HSPs)
chr7 (29-247)||(3642524-3642742)
chr7 (190-231)||(13093963-13094004)
[»] scaffold0237 (1 HSPs)
scaffold0237 (35-248)||(21829-22042)
[»] scaffold1840 (1 HSPs)
scaffold1840 (29-213)||(930-1114)
[»] scaffold0572 (1 HSPs)
scaffold0572 (29-213)||(2752-2936)
[»] scaffold0177 (1 HSPs)
scaffold0177 (80-232)||(26856-27008)
[»] chr8 (1 HSPs)
chr8 (29-247)||(13904891-13905110)
[»] chr2 (1 HSPs)
chr2 (42-118)||(15063183-15063259)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 24941905 - 24941683
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24941905 cacaccttgttttatcataacagctaacacatttctagcttgtttaatttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 24941806  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  24941805 gggctgatgtttttcaacaacatttgatttaacaaacgaacagcttctttaaattgacccacaatacaaaagccatatattagagtagtataagtgacaa 24941706  T
Q  229 catctggaaaaattctcttaaca 251  Q
    |||||||||||||||||||||||    
T  24941705 catctggaaaaattctcttaaca 24941683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 24934372 - 24934150
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||||||||||||| ||||||| || | ||| ||     
T  24934372 cacaccttgttttatcataacagctaacacatttctagcttttttcatctctccttccttacataaaccatcaaccaatatattaaatgtataaacgtct 24934273  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||  | ||||||||||||||||||||||| |||||| ||||||||||||| ||| || | |||||  || ||||||||||||||||||||||||||||||    
T  24934272 ggtttaatgtttttcaacaacatttgattgaacaaaccaactgcttctttcaatcgacccacaatcaaacagccatatattagagtagtataagtgacaa 24934173  T
Q  229 catctggaaaaattctcttaaca 251  Q
    |||||||||||||||||||||||    
T  24934172 catctggaaaaattctcttaaca 24934150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 21160923 - 21161135
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||||||||||| ||||||||| |||||||||| ||| |  |||||||||||||||||||||||||||||||| |||||||||  |||||  ||||    
T  21160923 ccttgttttatcataaaagctaacacttttctagcttttttcatctctccttccttacataaaccatcaaccaatgtgttaaaagttacaacattggggc 21161022  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||| | |||| | ||||| |||||||||||||||| |||| |||| || || ||||     
T  21161023 tgatgtttttcaacaacatttcatttaacaaatcaattgcttgtttcatttgacccacaatgcaaaagccatatattaaagtattataggtaaccacatt 21161122  T
Q  233 tggaaaaattctc 245  Q
     ||||| ||||||    
T  21161123 aggaaatattctc 21161135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 29950191 - 29950387
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||| |||||||||||||||||| ||||||| |||||||| ||| || ||||||| ||||||||||||||| ||||||||| | |||||  ||||||||    
T  29950191 cacacgttgttttatcataacagccaacacatgtctagcttttttcacctctccttgcttacataaaccatcgaccaatgtagtgaaagtaagaacatcc 29950290  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtga 225  Q
    || ||||||||||||| | ||||||||||||||||| ||||||||||||| | |||| | | |||  |||| ||||||||||||||| | |||||||    
T  29950291 ggactgatgtttttcatcgacatttgatttaacaaaccaactgcttctttcatttgacccaaaatggaaaaaccatatattagagtattgtaagtga 29950387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 30149232 - 30149036
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||| |||||||||||||||||| ||||||| |||||||| ||| || ||||||| ||||||||||||||| ||||||||| | |||||  ||||||||    
T  30149232 cacacgttgttttatcataacagccaacacatatctagcttttttcacctctccttacttacataaaccatcgaccaatgtagtgaaagtaagaacatcc 30149133  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtga 225  Q
    || ||||||||||||| | ||||||||||||||||| ||||||||||||| | |||| | | |||  |||| ||||||||||||||| | |||||||    
T  30149132 ggactgatgtttttcatcgacatttgatttaacaaaccaactgcttctttcatttgacccaaaatggaaaaaccatatattagagtattgtaagtga 30149036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 24739489 - 24739707
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||||||||||||| ||||||| || | ||  ||     
T  24739489 cacactttgttttatcataacagctaacacatttctagcttttttcatctctccttccttacataaaccatcaaccaatatattaaatgtataaatgtct 24739588  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||  | ||||||||||||||||||||||| |||||| ||||||||||||| ||| || | |||||  || ||||||| |||| |||| | |||||||  |    
T  24739589 ggtttaatgtttttcaacaacatttgattgaacaaaccaactgcttctttcaatcgacccacaatcaaacagccatacattaaagtattgtaagtgatga 24739688  T
Q  229 catctggaaaaattctctt 247  Q
    |||| ||| ||||||||||    
T  24739689 catcaggagaaattctctt 24739707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 15727462 - 15727632
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||| ||| ||||| ||||||| ||||||| |||||| ||| |  | |||||||||||||| | ||||||||||| | |||||||| | || |||     
T  15727462 cacaccttctttcatcatcacagctatcacatttttagcttctttgatctttccttccttacatagaacatcaaccaatatgttaaaagtataaatatct 15727561  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaa 199  Q
    ||| ||||||||||||| | ||||||||  |||||| ||| ||||||||| |||||| ||||||| |||||    
T  15727562 gggttgatgtttttcaatagcatttgatagaacaaaccaaatgcttctttcaattgaccaacaatgcaaaa 15727632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 29954012 - 29954117
Alignment:
Q  126 tccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtga 225  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||  |  | ||||| |||||||||||||||| ||| || |||||||    
T  29954012 tccggactgatgtttttcaacaacatttgatttaacaaattaactgcttctttcaaccgtcccacaatgcaaaagccatatattaaagtcgtgtaagtga 29954111  T
Q  226 caacat 231  Q
    ||||||    
T  29954112 caacat 29954117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 30578062 - 30578280
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||| |||||||||||||||||| || ||| || || ||  ||| || || |||||||||||||||||||| | |||| |||||||| |   |||||      
T  30578062 cacactttgttttatcataacagccaaaacacttttacctcctttcacatcaccttccttacataaaccatcgatcaatatattaaaactacaaacattt 30578161  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    |||   |||||||||||   ||||| ||| ||||||  ||  || ||||  |||||| | ||||||||||| ||||||||||||||| |||| |||||||    
T  30578162 gggacaatgtttttcaatctcatttcattaaacaaacgaatagcatcttccaattgacccacaatacaaaaaccatatattagagtattatacgtgacaa 30578261  T
Q  229 catctggaaaaattctctt 247  Q
    |||| ||||||||||||||    
T  30578262 catcaggaaaaattctctt 30578280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 29882136 - 29881922
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||||||||| |||||| ||| ||   |||||||||||| || |||||||||||| || |||| || |  |||| |||      
T  29882136 ccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttccttacaaaatccatcaaccaatatactaaaggtatacacattcggat 29882037  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||||||||| ||| | ||||| ||| |||||||||| ||| ||||| |||| | ||||||| ||||| |||   |||| || | |||||||||||||||     
T  29882036 tgatgttttccaatatcattttattaaacaaatcaattgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacatt 29881937  T
Q  233 tggaaaaattctctt 247  Q
     ||| ||||||||||    
T  29881936 aggagaaattctctt 29881922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 29909292 - 29909078
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||||||||| |||||| ||| ||   |||||||||||| || |||||||||||| || |||| || |  |||| |||      
T  29909292 ccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttccttacaaaatccatcaaccaatatactaaaggtatacacattcggat 29909193  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||||||||| ||| | ||||| ||| |||||||||| ||| ||||| |||| | ||||||| ||||| |||   |||| || | |||||||||||||||     
T  29909192 tgatgttttccaatatcattttattaaacaaatcaattgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacatt 29909093  T
Q  233 tggaaaaattctctt 247  Q
     ||| ||||||||||    
T  29909092 aggagaaattctctt 29909078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 30154199 - 30153983
Alignment:
Q  35 ttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctg 134  Q
    |||||||||||||||||  || ||| || |||||  ||| || |||||||||||||||||||||||||||||| |||| || || |  ||||  ||| ||    
T  30154199 ttgttttatcataacagtcaaaacacttttagctcttttcacctctccttccttacataaaccatcaaccaatatattgaaggtatacacattggggttg 30154100  T
Q  135 atgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctg 234  Q
     ||||||| |  | ||||| ||| |||||| ||||||||||||  |||||| | ||||| ||||| ||||| |||| | || |  ||||||| ||||  |    
T  30154099 gtgtttttgagtatcatttcattgaacaaaccaactgcttcttcgaattgacccacaatgcaaaatccatagattaaactattgaaagtgacgacattag 30154000  T
Q  235 gaaaaattctcttaaca 251  Q
    || ||||| ||||||||    
T  30153999 gataaattttcttaaca 30153983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 24272245 - 24272460
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||| ||||| |||||| ||| ||   |||||||||||| ||  ||||||||||| |||||||||| |  ||||| |||     
T  24272245 ccttgtttcatcatcatagctaacccatttttagcttctttcacccttccttccttacaaaatgcatcaaccaatatattaaaagtatacacatcagggt 24272344  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||||||||| | |   ||||| ||| |||||| ||| ||| ||||| |||| | ||||||| ||||| ||||  |||| || | ||||||||  ||||||    
T  24272345 tgatgttttccgatgtcattttattgaacaaaccaattgcatctttcaatttaccaacaatgcaaaaaccattaattaaagcattataagtgttaacatc 24272444  T
Q  233 tggaaaaattctctta 248  Q
     || ||||||||||||    
T  24272445 agggaaaattctctta 24272460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 29834916 - 29834746
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||||||||| |||||| ||| | || |||||||||||| ||  ||||||||||| ||||||| || |  | ||| |||     
T  29834916 ccttgtttcatcatcatagctaacacatttttagcttctttcatttttccttccttacaaaatgcatcaaccaatatattaaaggtatacatatcagggt 29834817  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagcca 203  Q
    ||||||||| |||   ||||| ||| |||||| ||| ||| ||||| |||| | ||||||| |||||||||    
T  29834816 tgatgttttccaatgtcattttattgaacaaaccaattgcatctttcaatttaccaacaatgcaaaagcca 29834746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 29866350 - 29866180
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||||||||| |||||| ||| | || |||||||||||| ||  ||||||||||| ||||||| || |  | ||| |||     
T  29866350 ccttgtttcatcatcatagctaacacatttttagcttctttcatttttccttccttacaaaatgcatcaaccaatatattaaaggtatacatatcagggt 29866251  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagcca 203  Q
    ||||||||| |||   ||||| ||| |||||| ||| ||| ||||| |||| | ||||||| |||||||||    
T  29866250 tgatgttttccaatgtcattttattgaacaaaccaattgcatctttcaatttaccaacaatgcaaaagcca 29866180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 29928974 - 29928760
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||||||||| |||||| ||| ||   |||||||||||| || |||||||||||| || |||| || |  | || |||      
T  29928974 ccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttccttacaaaatccatcaaccaatatactaaaggtatacaaatacggaa 29928875  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||||||||| ||| | ||||| ||| || ||||||| ||| ||||| |||| | ||||||| ||||| |||   |||| || | |||||||||||||||     
T  29928874 tgatgttttacaatatcattttattaaaaaaatcaaatgcatctttcaatttaccaacaatgcaaaatccactaattaaagcactataagtgacaacatt 29928775  T
Q  233 tggaaaaattctctt 247  Q
     ||| ||||||||||    
T  29928774 aggagaaattctctt 29928760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 16702325 - 16702496
Alignment:
Q  42 atcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttt 141  Q
    ||||| ||||||| ||||||| |||||| ||| |  | ||| |||||||| | | ||||||||||| |||||||||| | |||||  ||| |||||||||    
T  16702325 atcatcacagctatcacatttttagcttctttgatctttccgtccttacaaagagcatcaaccaatatattaaaagtataaacatttgggttgatgtttt 16702424  T
Q  142 tcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagag 213  Q
    |||| | ||||| ||  ||||||  ||  |||||||| |||||| ||||||| ||||| | ||| |||||||    
T  16702425 tcaataccatttcatggaacaaactaaacgcttctttcaattgaccaacaatgcaaaatcaatagattagag 16702496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 24264050 - 24264245
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||| ||||| |||||| ||| ||   |||||||||||| ||  ||||||||||| |||||||||| |  ||||| |||     
T  24264050 ccttgtttcatcatcatagctaacccatttttagcttctttcacccttccttccttacaaaatgcatcaaccaatatattaaaagtatacacatcagggt 24264149  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||||||||| | |   ||||| ||| |||||| ||| ||| ||||| |||| | ||||||| |||||||||   |||| || | ||||||||||||    
T  24264150 tgatgttttccgatgtcattttattgaacaaaccaattgcatctttcaatttaccaacaatgcaaaagccactaattaaagcactataagtgacaa 24264245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 248
Target Start/End: Complemental strand, 29886998 - 29886783
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||||||||| |||| | ||| || | |||||||||||| ||  ||||||||||| |||||||||| |  |||   |||     
T  29886998 ccttgtttcatcatcatagctaacacatttttagcctcttttacgtttccttccttacaaaatgcatcaaccaatatattaaaagtatacacagttgggt 29886899  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||||||||||| |   ||||| ||| || ||||||  ||| ||||| |||| | ||||||| |||||||||   |||| || | | ||||||| ||||||    
T  29886898 tgatgtttttcgatgtcattttattgaataaatcagttgcatctttcaatttaccaacaatgcaaaagccactaattaaagcattgtaagtgaaaacatc 29886799  T
Q  233 tggaaaaattctctta 248  Q
     || ||||||||||||    
T  29886798 ggggaaaattctctta 29886783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 30028786 - 30028631
Alignment:
Q  86 cttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattga 185  Q
    |||||| || ||||||| |||| |||||||||| | ||||||||||   ||||||||||||| ||||| ||| |||||   ||| || ||||| || |||    
T  30028786 cttacacaacccatcaatcaatatattaaaagtataaacatccgggtcaatgtttttcaacatcatttcattaaacaacctaacagcatctttcaactga 30028687  T
Q  186 tcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaat 241  Q
     | ||||||||||| |||||||| |  ||| ||||||| |||||||  ||||||||    
T  30028686 cccacaatacaaaaaccatatatcaacgtactataagtaacaacattcggaaaaat 30028631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 29902957 - 29902759
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||| ||||| | ||||||||||||| |||||| ||| ||   |||||||||||| ||||||||||||||| || ||||||| |  ||||  |||     
T  29902957 ccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttccttacaaaaaccatcaaccaatatagtaaaagtatacacatttgggt 29902858  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacat 231  Q
    |||||||||  || | ||||| ||| || ||||||| ||| ||| | | || | ||||||| ||||| |||   |||| || | |||||||||||||||    
T  29902857 tgatgttttcgaatatcattttattaaagaaatcaattgcatctctcagtttaccaacaatgcaaaatccactaattaaagcactataagtgacaacat 29902759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 25450770 - 25450625
Alignment:
Q  82 cttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaa 181  Q
    |||||||||| ||| ||||||||||| || ||||||| |  |||| |||| | |  |||  ||| | ||||| ||| |||||||||||||||||||| ||    
T  25450770 cttccttacaaaaagcatcaaccaatatagtaaaagtatacacattcgggttaacctttcccaatatcattttattaaacaaatcaactgcttctttcaa 25450671  T
Q  182 ttgatcaacaatacaaaagccatatattagagtagtataagtgaca 227  Q
    || | ||||||| |||||||||   |||| |||| |||||||||||    
T  25450670 tttaccaacaatgcaaaagccacgaattaaagtactataagtgaca 25450625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 29358277 - 29358422
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||| | ||||| | ||||||||||||| |||||| ||| ||   |||||||||||| || |||||||| ||| || |||| || |  |||||||||     
T  29358277 ccttgtatcatcatcatagctaacacatttttagcttctttcacccttccttccttacaaaatccatcaactaatatagtaaaggtatacacatccgggt 29358376  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttcttt 178  Q
    ||||||||| ||| | ||||| ||| |||| ||||||||| |||||    
T  29358377 tgatgttttccaatatcattttattaaacagatcaactgcatcttt 29358422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 29897777 - 29897613
Alignment:
Q  34 cttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggct 133  Q
    ||||||| ||||| | ||| ||||||||| |||||| ||| ||    ||||||||||| || |||||||||| | || |||| || |  ||||||||| |    
T  29897777 cttgtttcatcatcatagcaaacacatttttagcttctttcac----ccttccttacaaaatccatcaacca-tatactaaaggtatacacatccgggat 29897683  T
Q  134 gatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagcca 203  Q
    |||||||||||| | ||||| ||| |||||| ||| ||| ||||| |||| | ||||||| |||||||||    
T  29897682 gatgtttttcaatatcattttattgaacaaaccaattgcatctttcaatttaccaacaatgcaaaagcca 29897613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 15715280 - 15715499
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||||||| ||||| | ||||| || |||| ||||||||||||| | |||||| ||||| | | ||||||||||  ||||| |||| | |||||      
T  15715280 cacaccttgtttcatcatcatagctatcatatttttagcttgtttaacatttccttctttacaaagagcatcaaccaagatattagaagtataaacattt 15715379  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgctt-ctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgaca 227  Q
    |||  ||||||| | || | ||||| ||  |||||| ||| |||||  ||| |||||| |||| || ||||||||||| || |||| | || |||| |||    
T  15715380 gggaggatgtttgttaataccatttcatggaacaaaccaaatgcttgttttgaattgaccaaccatgcaaaagccataaatgagagcactaaaagttaca 15715479  T
Q  228 acatctggaaaaattctctt 247  Q
    ||||  ||| ||||||||||    
T  15715480 acattaggagaaattctctt 15715499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 30132412 - 30132332
Alignment:
Q  34 cttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaa 114  Q
    ||||||||||||| ||||| ||| |||| ||| ||| ||| |  ||||||| ||||||||||| |||||||||| ||||||    
T  30132412 cttgttttatcattacagccaacgcattgctaacttttttcatctctcctttcttacataaactatcaaccaatatattaa 30132332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 29894203 - 29894096
Alignment:
Q  84 tccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaatt 183  Q
    |||||||| || |||||||||||| |||||||||| |  ||||||||  ||||||||| ||| | ||||| ||| |||| ||||| ||| ||||| | ||    
T  29894203 tccttacaaaatccatcaaccaatatattaaaagtatacacatccggtttgatgttttccaatatcattttattaaacagatcaattgcatctttcagtt 29894104  T
Q  184 gatcaaca 191  Q
    || |||||    
T  29894103 gaccaaca 29894096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 29905341 - 29905258
Alignment:
Q  32 accttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaa 115  Q
    ||||| ||| ||||||||| | ||||||||| |||||| ||| |||| |||||||||||| ||  ||||||| ||| |||||||    
T  29905341 accttttttcatcataacaacaaacacatttttagcttcttttacttttccttccttacaaaatgcatcaacgaatatattaaa 29905258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 29073413 - 29073319
Alignment:
Q  84 tccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttt 178  Q
    |||||||| || |||||||||||| |||||||||| |  ||||||||  ||||||||| ||| | ||||| ||| |||| ||||| ||| |||||    
T  29073413 tccttacaaaatccatcaaccaatatattaaaagtatacacatccggtttgatgttttccaatatcattttattaaacagatcaattgcatcttt 29073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 29105986 - 29105892
Alignment:
Q  84 tccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttt 178  Q
    |||||||| || |||||||||||| |||||||||| |  ||||||||  ||||||||| ||| | ||||| ||| |||| ||||| ||| |||||    
T  29105986 tccttacaaaatccatcaaccaatatattaaaagtatacacatccggtttgatgttttccaatatcattttattaaacagatcaattgcatcttt 29105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 29348896 - 29348970
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaat 107  Q
    |||||||| ||||| | ||||||||||||| |||||| ||| ||   |||||||||||| || ||||||||||||    
T  29348896 ccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttccttacaaaatccatcaaccaat 29348970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 30134850 - 30134781
Alignment:
Q  36 tgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaat 107  Q
    ||||||| ||||| ||| | |||||||||||||| || | |  ||||||||||||||||||||||| |||||    
T  30134850 tgttttaacataatagccatcacatttctagctttttcacc--ctccttccttacataaaccatcatccaat 30134781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 44262887 - 44263105
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44262887 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 44262986  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||    
T  44262987 aggctgatgtttttcaacaacatttgatttaacaaaccaactgcttctttaaattgacccacaatacaaaagccatgtattagagtagtataagtgacaa 44263086  T
Q  229 catctggaaaaattctctt 247  Q
    |||| ||||||||||||||    
T  44263087 catccggaaaaattctctt 44263105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 44167 - 44385
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||||||||||||||||||| |||||||||||||||| ||| || ||||| |||||||||||| |||||| |||  || |||| || | |||||  |||     
T  44167 ccttgttttatcataacagccaacacatttctagcttttttcacctctccatccttacataaaacatcaatcaaaatactaaaggtgtaaacattggggt 44266  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||| ||||||||||  |||| ||||||||||| ||||||||||||| | |||| | | |||| |||| ||||||||||||||| | |||||||   ||||    
T  44267 tgacgtttttcaacgtcattcgatttaacaaaccaactgcttctttcatttgacccaaaatagaaaaaccatatattagagtattgtaagtgatggcatc 44366  T
Q  233 tggaaaaattctcttaaca 251  Q
     ||| ||||| ||||||||    
T  44367 aggataaattttcttaaca 44385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 8700 - 8499
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||||||| | ||| | ||||||||||||| |||||| ||| | || |||||||||||| | | ||||||||||| |||||||||| | |||||      
T  8700 cacaccttgtttcaccatcatagctaacacatttttagcttctttcatttttccttccttacagagagcatcaaccaatatattaaaagtataaacattt 8601  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||| ||||||||||||| | ||||| ||| ||||||  || ||| ||||| |||||| ||||||||||||| ||||| ||||||| | |  |||||||||    
T  8600 gggttgatgtttttcaataccatttcattgaacaaacgaaatgcatctttgaattgaccaacaatacaaaatccatagattagagaactgaaagtgacaa 8501  T
Q  229 ca 230  Q
    ||    
T  8500 ca 8499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 140002 - 139785
Alignment:
Q  30 acaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccg 129  Q
    ||||||| ||| |||||||| ||||||| |||  |||||  ||| || |||||||| ||||| | | ||||||||||| |||||||||| | ||||||      
T  140002 acaccttctttcatcataacggctaacagattcttagctactttcacatctccttctttacaaagagcatcaaccaatatattaaaagtataaacatctc 139903  T
Q  130 ggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaac 229  Q
    || ||||||||||||| | ||||| ||  ||||||  || ||| ||||| |||||| ||||||||||||| ||||| ||||||| | |  ||||||||||    
T  139902 ggttgatgtttttcaataccatttcatggaacaaacgaaatgcatctttgaattgaccaacaatacaaaatccatagattagagaactgaaagtgacaac 139803  T
Q  230 atctggaaaaattctctt 247  Q
    ||| ||| ||||| ||||    
T  139802 atcaggataaattttctt 139785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 105081 - 105233
Alignment:
Q  78 tctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctt 177  Q
    |||||||||||||| | | ||||||||||| |||||||||| |  ||||| ||| ||||||||||||| | ||||||||  | |||| ||| ||||||||    
T  105081 tctccttccttacaaagagcatcaaccaatatattaaaagtatacacatctgggttgatgtttttcaataccatttgatggaccaaaccaaatgcttctt 105180  T
Q  178 taaattgatcaacaatacaaaagccatatattagagtagtataagtgacaaca 230  Q
    | |||||| ||||||| ||||| ||||| ||||||| | || |||||||||||    
T  105181 tcaattgaccaacaatgcaaaacccataaattagagcactaaaagtgacaaca 105233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 137028 - 136861
Alignment:
Q  80 tccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttta 179  Q
    ||||||||| || | | ||||||||||| |||||||||| | | |||  ||| ||||||||||||| | ||||||||  |||||| ||| |||||||||     
T  137028 tccttccttgcaaagagcatcaaccaatatattaaaagtataatcatttgggttgatgtttttcaataccatttgatggaacaaaccaaatgcttctttc 136929  T
Q  180 aattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaattctctt 247  Q
    ||| || ||||||| ||||| ||||| ||||||| | |  ||||||||||||| ||| ||||| ||||    
T  136928 aatcgaccaacaatgcaaaatccatagattagagaattgaaagtgacaacatcaggagaaattgtctt 136861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 121769 - 121949
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||| ||| ||||| ||||||| ||||||| |||||| ||| |  | ||||||||| || | | |||||| |||| |  ||||||| | || ||  |||     
T  121769 ccttctttcatcatcacagctatcacatttttagcttctttgatctttccttccttgcaaagagcatcaatcaatatggtaaaagtataaatatttgggt 121868  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagag 213  Q
    ||||||||||||| | ||||| ||  |||||| ||| ||||||||| |||||| ||||||| ||||| ||||| |||||||    
T  121869 tgatgtttttcaatagcatttcatggaacaaaccaaatgcttctttcaattgaccaacaatgcaaaatccatagattagag 121949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 24226525 - 24226376
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||| |||||||||||||| ||| |||||||||||||||| ||| || ||||| ||||||||||| ||||| ||||||||| |||||||  ||| || |    
T  24226525 cacacgttgttttatcataatagccaacacatttctagcttttttgacctctccatccttacataacccatcgaccaatgtagtaaaagtacgaatattc 24226426  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttt 178  Q
    ||| ||| | ||||  |   |||||||||||||||| |||||||||||||    
T  24226425 ggggtgacggttttagatgtcatttgatttaacaaaccaactgcttcttt 24226376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 16350755 - 16350554
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||| ||| ||||| ||||||| ||||||| |||||| ||| |  | |||||||||||| | | ||||||||||| |||||||||| | | ||||     
T  16350755 cacaccttctttcatcatcacagctatcacatttttagcttctttgatctttccttccttacaaagagcatcaaccaatatattaaaagtataagcatct 16350656  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||| ||||||||||||  | ||||| ||| ||||||  || ||| ||||| |||| | ||||||||||||| ||||| ||||||| | |  |||||||||    
T  16350655 gggttgatgtttttcattaccatttcattaaacaaacgaaatgcatctttgaatttaccaacaatacaaaatccatagattagagaactgaaagtgacaa 16350556  T
Q  229 ca 230  Q
    ||    
T  16350555 ca 16350554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 242
Target Start/End: Complemental strand, 11990966 - 11990804
Alignment:
Q  80 tccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttta 179  Q
    |||||||||||| | | ||||||||||| |||||||||| | |  ||| ||| ||||||||||||| | ||||| |   |||||| ||| ||||||||      
T  11990966 tccttccttacaaagagcatcaaccaatatattaaaagtataataatcagggttgatgtttttcaataccatttcacgaaacaaaccaaatgcttcttcc 11990867  T
Q  180 aattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaatt 242  Q
    | |||| ||||||| ||||| ||||| ||||||| | || ||||||||||||| ||| |||||    
T  11990866 agttgaccaacaatgcaaaatccataaattagagcactaaaagtgacaacatcgggagaaatt 11990804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 248
Target Start/End: Original strand, 24219554 - 24219748
Alignment:
Q  54 aacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacattt 153  Q
    ||||||||| |||||| ||| |||| |||||||||||| ||  ||||||||||| || |||| || |  |||   ||| ||||||||| ||| | |||||    
T  24219554 aacacatttttagcttctttcacttttccttccttacaaaatgcatcaaccaatatactaaaggtatacacagttgggttgatgttttccaatatcattt 24219653  T
Q  154 gatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaattctctta 248  Q
     || ||||||| ||| ||| ||||| |||||| | | ||| || || ||| | |||| |||| ||||||||||||||   ||| |||||||||||    
T  24219654 tatgtaacaaaccaattgcatctttcaattgacccataatgcataaaccacaaattaaagtattataagtgacaacagtaggacaaattctctta 24219748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 1514 - 1732
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||| ||| ||||| | ||||| ||||||| |||||| |||    | |||||||||||| ||| |||| |||||| |||||||||| |  |||||     
T  1514 cacaccttctttcatcatcatagctatcacatttttagcttctttcgtgtttccttccttacaaaaagcatcgaccaatatattaaaagtatacacatca 1613  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||| ||||||||||||| | |||||  |  |||||| ||| ||||||||| | |||| ||||||| ||||| ||||| || |||| | || |||||||||    
T  1614 gggttgatgtttttcaataccatttcgtgaaacaaaccaaatgcttctttcagttgaccaacaatgcaaaatccataaatcagagcactaaaagtgacaa 1713  T
Q  229 catctggaaaaattctctt 247  Q
    |||| ||| ||||||||||    
T  1714 catcgggagaaattctctt 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 126417 - 126635
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    ||||| || ||| ||||| ||||||| |||| || |||||| ||| |  | |||||||||||||| | ||||||||| | |||||||||| | ||||||     
T  126417 cacacattctttcatcatcacagctatcacacttttagcttctttcatctttccttccttacatagagcatcaaccattatattaaaagtataaacatct 126516  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||| ||||||||||||| |  |||| ||  ||||||  ||  || ||||| |||||| ||||||||||||| ||||| ||||||| | |  |||||||||    
T  126517 gggttgatgtttttcaatactatttcatggaacaaacgaaacgcatctttgaattgaccaacaatacaaaatccataaattagagaattgaaagtgacaa 126616  T
Q  229 catctggaaaaattctctt 247  Q
    |||  ||| ||||||||||    
T  126617 cattgggagaaattctctt 126635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 19489904 - 19489743
Alignment:
Q  80 tccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttta 179  Q
    |||||||||  | ||| ||||||||||||||||||| || | |||||||||  ||||||||||||| | ||||| |||||||||  |||   |||||||     
T  19489904 tccttccttgaacaaagcatcaaccaatgtattaaatgtataaacatccggattgatgtttttcaataccatttcatttaacaatacaaacacttctttc 19489805  T
Q  180 aattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaat 241  Q
    |||||| | || |||||||| |||| ||||||| |||| ||||||| |||||| ||| ||||    
T  19489804 aattgaccgacgatacaaaacccatgtattagactagtgtaagtgaaaacatcaggagaaat 19489743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 17250967 - 17250884
Alignment:
Q  80 tccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaa 163  Q
    |||||||||||||||||||||||||||||||||||| ||   |||||  ||| | | ||||||||||| ||||| |||||||||    
T  17250967 tccttccttacataaaccatcaaccaatgtattaaacgtacaaacattagggtttacgtttttcaacaccatttcatttaacaa 17250884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 242
Target Start/End: Complemental strand, 41315923 - 41315761
Alignment:
Q  80 tccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttta 179  Q
    |||||||||||||| ||||||||||||  |  ||||||| |  ||   |||| | ||||||||||| | ||||||| | |||||| ||| ||| |||||     
T  41315923 tccttccttacatagaccatcaaccaaaatggtaaaagtatacacgctcgggttaatgtttttcaataccatttgactgaacaaaccaaatgcatctttc 41315824  T
Q  180 aattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaatt 242  Q
    |||||| ||| ||| ||||| ||||||||||||| | |  ||||| ||||||| ||| |||||    
T  41315823 aattgaccaataatgcaaaatccatatattagagaattgaaagtggcaacatcaggagaaatt 41315761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 10129712 - 10129623
Alignment:
Q  159 aacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaattctctta 248  Q
    |||||| ||| ||| ||||| |||||| | ||||  |||||||||   |||| | || |||||||||||||||| |||||||||||||||    
T  10129712 aacaaaccaattgcatctttcaattgacccacaacgcaaaagccactaattaaattattataagtgacaacatcaggaaaaattctctta 10129623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 20888237 - 20888091
Alignment:
Q  84 tccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaatt 183  Q
    ||||||||||||||| ||||||||||| |||||||  |||||| |||| |||| ||| ||||||||| ||  ||||||||| ||||||||||||| ||||    
T  20888237 tccttacataaacca-caaccaatgtagtaaaagtaagaacattcgggttgatatttctcaacaacaatt-ctttaacaaaccaactgcttctttcaatt 20888140  T
Q  184 gatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    ||   |||||   ||| |||||||||| |||| | ||||||||||||||    
T  20888139 gactgacaatgtcaaacccatatattaaagtaatttaagtgacaacatc 20888091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 5850 - 5683
Alignment:
Q  80 tccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttta 179  Q
    |||||||||||| | | ||||||||||| |||||||||| |  ||||  ||| ||||||||||||| | ||||| ||  |||||| ||| ||||||| |     
T  5850 tccttccttacaaagagcatcaaccaatatattaaaagtatacacatttgggttgatgtttttcaataccatttcatggaacaaaccaaatgcttctatc 5751  T
Q  180 aattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaattctctt 247  Q
    |||||| ||||||| ||||| ||||| |||| || | |  ||||||||||||| ||| ||||| ||||    
T  5750 aattgaccaacaatgcaaaatccatagattaaagaattgaaagtgacaacatcaggagaaattttctt 5683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 43582 - 43799
Alignment:
Q  30 acaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccg 129  Q
    ||||||||||| ||||| |  ||||||| |||  |||||  ||| || | |||||||||||| | | ||||||||||| |||||||||| |  ||||  |    
T  43582 acaccttgtttcatcatcatggctaacagattcttagctcctttcacatttccttccttacaaagagcatcaaccaatatattaaaagtatacacatttg 43681  T
Q  130 ggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaac 229  Q
    || ||||||||||||| | ||||| ||  |||||| ||| ||||||| | |||||| ||||||  ||||| ||||| |||| || | |  ||||||||||    
T  43682 ggttgatgtttttcaataccatttcatggaacaaaccaaatgcttctatcaattgaccaacaaagcaaaatccatagattaaagaattgaaagtgacaac 43781  T
Q  230 atctggaaaaattctctt 247  Q
    ||| ||| ||||| ||||    
T  43782 atcaggagaaattttctt 43799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 50799 - 50982
Alignment:
Q  30 acaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccg 129  Q
    ||||||| ||| |||||||| ||||||| |||  |||||  ||| || | |||||||||||| | | ||||||||||| |||||||||| | |||||  |    
T  50799 acaccttctttcatcataacggctaacagattcatagctcctttcacatttccttccttacaaagagcatcaaccaatatattaaaagtataaacatttg 50898  T
Q  130 ggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagag 213  Q
    ||  ||||||| |||| | ||||| ||  ||||||  || ||||| ||| | |||| ||||||| ||||| |||||||||||||    
T  50899 ggtggatgtttgtcaatagcatttcatggaacaaacaaaatgcttttttcagttgaccaacaatgcaaaatccatatattagag 50982  T

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Target: scaffold0086 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 31603 - 31783
Alignment:
Q  33 ccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggc 132  Q
    |||| ||| ||||| ||||||| ||||||| |||||| ||| |  | || ||||||||||| | ||||||||||| |  ||||||| | || ||| |||     
T  31603 ccttctttcatcatcacagctatcacatttttagcttctttgatctttcattccttacatagaacatcaaccaatatgctaaaagtataaatatctgggt 31702  T
Q  133 tgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagag 213  Q
    ||||||||||||| | ||||| |   |||||| ||| ||||||||| |||||| ||||||| ||||| ||||  |||||||    
T  31703 tgatgtttttcaataccatttcacggaacaaaccaaatgcttctttgaattgaccaacaatgcaaaatccatggattagag 31783  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 3642742 - 3642524
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||||||| |||||||| ||||||| |||  |||||  | | |  | ||| |||||||| | | ||||||||||| || | ||||| | ||||||     
T  3642742 cacaccttgtttcatcataacggctaacatattcttagctcttgtgatatttccatccttacaaagagcatcaaccaatatactgaaagtataaacatct 3642643  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaa 228  Q
    ||| |||| |||||||| | ||||| ||  |||||| ||| ||||||||| |||||| ||||||  ||||| ||  | ||||||| | |  |||||||||    
T  3642642 gggttgatatttttcaataccatttcatggaacaaaccaaatgcttctttcaattgaccaacaacgcaaaatcccaagattagagaattgaaagtgacaa 3642543  T
Q  229 catctggaaaaattctctt 247  Q
    |||| ||| ||||||||||    
T  3642542 catcgggagaaattctctt 3642524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 13093963 - 13094004
Alignment:
Q  190 caatacaaaagccatatattagagtagtataagtgacaacat 231  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  13093963 caatacaaaagccatatattagtgtagtatgagtgacaacat 13094004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 22042 - 21829
Alignment:
Q  35 ttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctg 134  Q
    |||||| ||||| | ||||||||||||| |||| | ||| |  | ||| |||||||| || |||||||||||| || |||| || |  ||||| ||| ||    
T  22042 ttgtttcatcatcatagctaacacatttttagcctcttttatgtttccgtccttacaaaatccatcaaccaatatactaaaggtatacacatctgggatg 21943  T
Q  135 atgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatctg 234  Q
    ||||||||| |   ||||| ||| || ||||||| ||| ||||| |||| | ||||||| |||||||||   |||| || | | ||||||| |||||| |    
T  21942 atgtttttcgatgtcattttattgaataaatcaattgcatctttcaatttaccaacaatgcaaaagccactaattaaagcattgtaagtgaaaacatcgg 21843  T
Q  235 gaaaaattctctta 248  Q
    | ||||||||||||    
T  21842 ggaaaattctctta 21829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1840 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 1114 - 930
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||| ||| ||||| ||||||| | || || |||||| ||| |  | |||||||||||||| | | ||||||||| | |||||||| |  |||||     
T  1114 cacaccttctttcatcatcacagctatcccacttttagcttctttgatctttccttccttacatagagcgtcaaccaatatgttaaaagtatacacatct 1015  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagag 213  Q
    ||| ||||||||||||| | ||||| |   | |||| ||| ||||||||| |||||| ||||||| ||| | ||||| |||||||    
T  1014 gggttgatgtttttcaataccatttcacggagcaaaccaaatgcttctttgaattgaccaacaatgcaatatccatagattagag 930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 2936 - 2752
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||| ||| ||||| ||||||| | || || |||||| ||| |  | |||||||||||||| | | ||||||||| | |||||||| |  |||||     
T  2936 cacaccttctttcatcatcacagctatcccacttttagcttctttgatctttccttccttacatagagcgtcaaccaatatgttaaaagtatacacatct 2837  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgcttctttaaattgatcaacaatacaaaagccatatattagag 213  Q
    ||| ||||||||||||| | ||||| |   | |||| ||| ||||||||| |||||| ||||||| ||| | ||||| |||||||    
T  2836 gggttgatgtttttcaataccatttcacggagcaaaccaaatgcttctttgaattgaccaacaatgcaatatccatagattagag 2752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 27008 - 26856
Alignment:
Q  80 tccttccttacataaaccatcaaccaatgtattaaaagtttgaacatccgggctgatgtttttcaacaacatttgatttaacaaatcaactgcttcttta 179  Q
    |||||||||||| | | |||| |||||| |||| |||||   |||||| ||| |||||||| |||| | ||||| ||  |||||| ||| |||||||||     
T  27008 tccttccttacaaagagcatcgaccaatatattgaaagtacaaacatcagggttgatgtttgtcaataccatttcatggaacaaaccaaatgcttctttg 26909  T
Q  180 aattgatcaacaatacaaaagccatatattagagtagtataagtgacaacatc 232  Q
    |||||| |||| || ||||| ||||| ||||||| | || |||| ||||||||    
T  26908 aattgaccaaccatgcaaaatccatagattagagcactaaaagttacaacatc 26856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 13904891 - 13905110
Alignment:
Q  29 cacaccttgttttatcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagtttgaacatcc 128  Q
    |||||||||||| ||||| | ||||| || |||| ||||||||||||| | |||||| ||||| | | ||||||||||  ||||| |||| | |||||      
T  13904891 cacaccttgtttcatcatcatagctatcatatttttagcttgtttaacatttccttctttacaaagagcatcaaccaagatattagaagtataaacattt 13904990  T
Q  129 gggctgatgtttttcaacaacatttgatttaacaaatcaactgctt-ctttaaattgatcaacaatacaaaagccatatattagagtagtataagtgaca 227  Q
    |||  ||||||| | || | ||||| ||  |||||| ||| |||||  ||| |||||| |||| || ||||||||||| || |||| | || |||| |||    
T  13904991 gggaggatgtttgttaataccatttcatggaacaaaccaaatgcttgttttgaattgaccaaccatgcaaaagccataaatgagagcactaaaagttaca 13905090  T
Q  228 acatctggaaaaattctctt 247  Q
    ||||  ||| ||||||||||    
T  13905091 acattaggagaaattctctt 13905110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 15063183 - 15063259
Alignment:
Q  42 atcataacagctaacacatttctagcttgtttaacttctccttccttacataaaccatcaaccaatgtattaaaagt 118  Q
    ||||| ||||||||||||||| |||||| | | || | |||||||||||| |||||||||| |||| || |||||||    
T  15063183 atcatcacagctaacacatttttagcttctctcacctttccttccttacaaaaaccatcaatcaatatactaaaagt 15063259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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