View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_10 (Length: 602)

Name: NF1213_low_10
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_10
NF1213_low_10
[»] chr4 (1 HSPs)
chr4 (158-501)||(44523853-44524199)
[»] chr2 (4 HSPs)
chr2 (158-342)||(41318931-41319115)
chr2 (339-498)||(41322105-41322264)
chr2 (410-500)||(37726150-37726240)
chr2 (158-225)||(6128526-6128593)
[»] chr5 (1 HSPs)
chr5 (158-499)||(12503202-12503537)
[»] chr7 (6 HSPs)
chr7 (29-155)||(3800072-3800198)
chr7 (503-594)||(3800200-3800291)
chr7 (519-594)||(3789813-3789888)
chr7 (157-226)||(11831185-11831254)
chr7 (156-220)||(37130520-37130584)
chr7 (157-207)||(11831132-11831182)
[»] chr8 (1 HSPs)
chr8 (157-243)||(7495621-7495707)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 158 - 501
Target Start/End: Complemental strand, 44524199 - 44523853
Alignment:
Q  158 tgtaaagaataatgaagattcctctcttaatga---atcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgcattaata 254  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  44524199 tgtaaagaataatgaagattcctctcttaatgatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgtaatgccttaata 44524100  T
Q  255 catggagtcaaaccataagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacacttaatgtatatctct 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44524099 catggagtcaaaccataagtatatttccttatatgatgtttattactgttggcttatcaaaagcaaataatagccatgaagacacttaatgtatatctct 44524000  T
Q  355 ttataccatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatatacaaacctgattacat 454  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||    
T  44523999 ttatatcatgtttattaccgttggttattcgacatatatatgtaagtgtaacatgtactttagagacatcagtggacataatatacaaacctgattacat 44523900  T
Q  455 tccagccactgtccattgttcatatcttatttttattttcattagag 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44523899 tccagccactgtccattgttcatatcttatttttattttcattagag 44523853  T

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Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 158 - 342
Target Start/End: Original strand, 41318931 - 41319115
Alignment:
Q  158 tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgcattaatacat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41318931 tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgccttaatacat 41319030  T
Q  258 ggagtcaaaccataagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacactta 342  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  41319031 ggagtcaaaccataagtatatttacttatatgatgtttattaccgttgacttatcaaaagcaaataatagccatgaagacactta 41319115  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 339 - 498
Target Start/End: Original strand, 41322105 - 41322264
Alignment:
Q  339 cttaatgtatatctctttataccatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatat 438  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||    
T  41322105 cttaatgtatatctctttatatcatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagagatatcagtgaacataatat 41322204  T
Q  439 acaaacctgattacattccagccactgtccattgttcatatcttatttttattttcatta 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41322205 acaaacctgattacattccagccactgtccattgttcatatcttatttttattttcatta 41322264  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 500
Target Start/End: Original strand, 37726150 - 37726240
Alignment:
Q  410 tactttagtgaaattagtggacataatatacaaacctgattacattccagccactgtccattgttcatatcttatttttattttcattaga 500  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  37726150 tactttagagatatcagtggacataatatacaaaccagattacattctagccactgtccattgttcatatcatatttttattttcattaga 37726240  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 6128593 - 6128526
Alignment:
Q  158 tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaa 225  Q
    |||||||||| | |||||||| ||   ||||| |||||||||||| || |||||||||||||||||||    
T  6128593 tgtaaagaatcaagaagattcatcaagtaatggatcaaatcaagacaagtcaaacaaaccattggaaa 6128526  T

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Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 158 - 499
Target Start/End: Complemental strand, 12503537 - 12503202
Alignment:
Q  158 tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgcattaatacat 257  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| |||         ||||||||||  |||  ||||||||||||||| || ||||||    
T  12503537 tgtaaagaataacgaagattcctct-ttaatgaatcaaatcaagataaa---------ccattggaaatcaat--gtgtgaatgcaatgccttgatacat 12503450  T
Q  258 ggagtcaaacca------------taagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacacttaatg 345  Q
    ||||||||||||            |||||||||||||||||||   |||||||||||||||||||||||||| |||||||||| || ||| |||||||||    
T  12503449 ggagtcaaaccaaatagaggcacttaagtatatttccttatatatggtttattaccgttggcttatcaaaaggaaataatagccataaagccacttaatg 12503350  T
Q  346 tatatctctttataccatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatatacaaacc 445  Q
    ||||| || ||||| |||||  ||||||||||| ||||   |||||||||      |||||||||||| ||| || ||||||||||||||||||||||||    
T  12503349 tatatttccttatatcatgtgcattaccgttggctattagtcatatatat------gtaacatgtactgtagagagattagtggacataatatacaaacc 12503256  T
Q  446 tgattacattccagccactgtccattgttcatatcttatttttattttcattag 499  Q
     |||||||||| ||| || ||||||||| |||||| |||||||| |||||||||    
T  12503255 agattacattctagctacagtccattgtccatatcatatttttactttcattag 12503202  T

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Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 3800072 - 3800198
Alignment:
Q  29 actatttaatggacacacttagtcgaactatttaaacaaacggtcttgtttcattgtttatgatttatgtgtgtttaatcttttgttaatagttgttgag 128  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||    
T  3800072 actatttaatggacacacttggtcgaactatttaaacaaacggtcttgtttcattgtttatgatttctgtctctttaatcttttgttactagttgttgag 3800171  T
Q  129 gtaacataatttcgagctctggttgag 155  Q
    |||||||||||||||||| ||||||||    
T  3800172 gtaacataatttcgagctttggttgag 3800198  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 503 - 594
Target Start/End: Original strand, 3800200 - 3800291
Alignment:
Q  503 tcaacatcaaatattccatgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgat 594  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800200 tcaacatcaaatatttcatgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgat 3800291  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 519 - 594
Target Start/End: Complemental strand, 3789888 - 3789813
Alignment:
Q  519 catgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgat 594  Q
    ||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  3789888 catgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgat 3789813  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 11831254 - 11831185
Alignment:
Q  157 ttgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaag 226  Q
    ||||||||||||||||||| ||  || ||||||||||||||||||| ||||||||||||| |||||||||    
T  11831254 ttgtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaatcaaacaaactattggaaag 11831185  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 37130520 - 37130584
Alignment:
Q  156 attgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccatt 220  Q
    |||||||||||||||||| | ||  || ||||||||||||||||||| |||||||| ||||||||    
T  37130520 attgtaaagaataatgaaaactcaactattaatgaatcaaatcaagacaaatcaaaaaaaccatt 37130584  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 11831132 - 11831182
Alignment:
Q  157 ttgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaat 207  Q
    ||||||||||||||||||| ||  || ||||||||||||||||||| ||||    
T  11831132 ttgtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaat 11831182  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 7495707 - 7495621
Alignment:
Q  157 ttgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgca 243  Q
    ||||||||||| |||||||||||||  | |||  ||||||| || | ||||||||||||||||| ||||  ||| ||| ||||||||    
T  7495707 ttgtaaagaatcatgaagattcctcaatcaatagatcaaatgaaaacaaatcaaacaaaccattagaaaataatttgtctgaatgca 7495621  T

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