View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_106 (Length: 241)
Name: NF1213_low_106
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_106 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2055022 - 2054802
Alignment:
| Q |
1 |
agagagaaaaattgtagattaaattccattttatactattatatgtaatttgcatcttataaacagacctttcctgtaaaagagatgcatctctagcaaa |
100 |
Q |
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| T |
2055022 |
agagagaaaaattgtagattaaattccattttatactattatatgtaatttgcatcttataaacagacctttcctgtaaaagagatgcatctctagcaaa |
2054923 |
T |
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| Q |
101 |
taagaaaaggatatataaaagctatttcatcgactaatatatgacaagattagagatattagaaaaaggctaagcttgagtatgacttaaataggcagcg |
200 |
Q |
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| T |
2054922 |
taagaaaaggatatataaaagctatttcatcgactaatatatgacaagattagagatattagaaaaaggctaagcttgagtatgacttaaataggcagcg |
2054823 |
T |
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| Q |
201 |
gagtattgtaagagttagaat |
221 |
Q |
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| T |
2054822 |
gagtattgtaagagttagaat |
2054802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 2033647 - 2033577
Alignment:
| Q |
137 |
atatatgacaagattagagatattagaaaaaggctaagcttgagtatgacttaaataggcagcggagtattgtaag |
212 |
Q |
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| T |
2033647 |
atataagacaaaattagagatattagaaaaag-----gcttgagtacgacttaaatacgctgcgaagtattgtaag |
2033577 |
T |
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