View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_11 (Length: 587)
Name: NF1213_low_11
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 29 - 420
Target Start/End: Original strand, 29486249 - 29486634
Alignment:
| Q |
29 |
agaaatacactgaaaaagtaacgaaaagggtataacacaattggaaaactcctccaatgaaaccctaaccctaagcaccaaggcaaaactaaagcaaaaa |
128 |
Q |
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| T |
29486249 |
agaaatacactgaaaaagtaacgaaaagggtataacacaattggaaaacttctccaatgaaaccctaaccctaagcaccaaggcaaaactaaagcaaaaa |
29486348 |
T |
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| Q |
129 |
acaatcacattattatcgatttctttacaaaattgttagtcggccaaataaaatcttccaatgacgttattcttaaggtttaaatagtggtcgatgtcat |
228 |
Q |
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| T |
29486349 |
acaatcacattattatcgatttctttacaaaattgttagtcggccaaataaaatcctccaatgacgttattcttaaggtttaaatagtggtcgatgtcat |
29486448 |
T |
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| Q |
229 |
ggagagcacgtccaagttccataaatgagaaggaagaaaataaataaaactttgtcctcccaaacatttgtggacacacactatgcacatgatagaggaa |
328 |
Q |
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| T |
29486449 |
ggagagcacgtccaagttccataaatgagaaggaagaaaataaataaaactttgtcctcccaaccatttgtggacacacactatgcacatgatagaggag |
29486548 |
T |
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| Q |
329 |
attttcattttcatattaaatttttgcacctaaaaagtgtaaggttcaaaagaaaaagacatattgttcaatataaaaatgaaagtgaggtc |
420 |
Q |
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| T |
29486549 |
attttcattttcatattaaatttttgcacctaaaaagtgtaaggttc------aaaagacatattgttcaatataaaaatgaaagtgaggtc |
29486634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 409 - 579
Target Start/End: Original strand, 29486663 - 29486832
Alignment:
| Q |
409 |
gaaagtgaggtctctagtcttttttaaaaatggatattaattatttggcatgcaattatttttaagtaactatagggccaagacattgactctacctaag |
508 |
Q |
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| T |
29486663 |
gaaagtgaggtctctagtctttt-taaaaatggatattaattatttggcatgcaattatttttaagtaactataggggcaagacattgactctacctaag |
29486761 |
T |
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| Q |
509 |
tctttcaaatgtatagttagcctctttacaccattcgtggtccccatggatttacctttcgttttcatctc |
579 |
Q |
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| T |
29486762 |
tctttcaaatgtatagttagcctctttacaccattcgtggtccccatagatttacctttcgttttcatctc |
29486832 |
T |
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