View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_114 (Length: 222)
Name: NF1213_low_114
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_114 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 17202659 - 17202795
Alignment:
| Q |
8 |
attattctgcaaattagtatcaacattttggatatnnnnnnntttagactttggaagacttatagcctagccagaagttgcctcatacttgaaagaatat |
107 |
Q |
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| T |
17202659 |
attattctgcaaattagtatcaacattttggatataaaaaaatttagactttggaagacttatagcctagccagaagctgcctcatacttaaaagaatat |
17202758 |
T |
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| Q |
108 |
tcttcattatgtgtgatttcatccctgttgtgaattg |
144 |
Q |
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| T |
17202759 |
tcttcattatgtgtgatttcatccctgttgtgaattg |
17202795 |
T |
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