View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1213_low_12 (Length: 574)
Name: NF1213_low_12
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 30 - 504
Target Start/End: Complemental strand, 42835168 - 42834694
Alignment:
| Q |
30 |
accatgtccaattccctgttcgcatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgagtag |
129 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42835168 |
accatgtccaattccctgttcgtatcttctatatcatgtattctttgaccaagttccctcaaagaactgatttcatcttgcagaaccatttgttgagtag |
42835069 |
T |
|
| Q |
130 |
catgcatctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattg |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42835068 |
catgcatctcttgtttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattg |
42834969 |
T |
|
| Q |
230 |
tattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgc |
329 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42834968 |
tattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttccgagttcaatttttgc |
42834869 |
T |
|
| Q |
330 |
acatcttgcttatggttagtttcattatcctcatacactgtaaccaaatctcctagcatttgattcttctttctctctgaaaccagctccaattctgatt |
429 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42834868 |
acatcttgcttatgtttagtttcattatcctcatacactgtaaccaaatctcctagcatttgactcttctttctctctgaaaccagctccaattctgatt |
42834769 |
T |
|
| Q |
430 |
tagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
504 |
Q |
| |
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| T |
42834768 |
tagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactccgcagttcat |
42834694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 83 - 343
Target Start/End: Complemental strand, 42843969 - 42843706
Alignment:
| Q |
83 |
ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgca--tct-cttgtttcaagttttcagcttcatatttacgtaatttgttt |
179 |
Q |
| |
|
||||||||||||| | | ||||||||||| | |||||| ||||||||||||| ||| |||||||||| |||||||||||||| | | |||||||||| |
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| T |
42843969 |
ttccctcaaagaattaacttcatcttgcaaagtcatttgctgagtagcatgcaattcttcttgtttcaatttttcagcttcatactgtcttaatttgttt |
42843870 |
T |
|
| Q |
180 |
tctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttct |
279 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||| ||||| | ||||||| | | |||||| |
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| T |
42843869 |
tccaattccttgtttctagactcacaatcctccaatttagaggtcaattgtattttcatgtttgacaaacttgtaatattagaattcagcttacctttct |
42843770 |
T |
|
| Q |
280 |
ccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgcacatcttgcttatg |
343 |
Q |
| |
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| |||||||||||| ||| ||| | |||||| ||| ||||||||||||| |||| |||||| |
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|
| T |
42843769 |
cagaagagaacttagtctgccaattatgcattttagacatcaatttttgcacctctttcttatg |
42843706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 495
Target Start/End: Complemental strand, 42819650 - 42819561
Alignment:
| Q |
406 |
ctgaaaccagctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactcc |
495 |
Q |
| |
|
||||||| | |||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||| ||| ||| ||||||||||| |
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| T |
42819650 |
ctgaaactaactccaattttgatatagccatattttcctgtgccactttaagctgaccttccaattgataagtctcagatgacttactcc |
42819561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 42819734 - 42819689
Alignment:
| Q |
310 |
tttcagagttcaatttttgcacatcttgcttatggttagtttcatt |
355 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42819734 |
tttccgagttcaatttttgcacatcttggttatggttagtttcatt |
42819689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 42843654 - 42843576
Alignment:
| Q |
416 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatgtgacttactc |
494 |
Q |
| |
|
|||||||||| ||||||| ||||| | |||| ||| |||||||| |||||||||| |||| ||||||||||||||| |
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|
| T |
42843654 |
ctccaattctaatttagcaatattgttttgtgctgcttcaagctgactttgcaattgacgagtatcatgtgacttactc |
42843576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 7363576 - 7363898
Alignment:
| Q |
30 |
accatgtccaattccctgttcgcatcttctatatc--atgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgttg |
124 |
Q |
| |
|
|||||| |||||| ||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||| | | |||||||||| || ||||||||| |
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|
| T |
7363576 |
accatgcccaatttcctattcacatcttctatatagtatgcattctttgaccaagttcttccctcaaagaattaacctcatcttgcaaaatcatttgttg |
7363675 |
T |
|
| Q |
125 |
agtagcatgca--tct-cttg-tttcaagttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttaga |
220 |
Q |
| |
|
||||||||||| ||| |||| |||||| |||||||||||||||| | |||||||||||| |||||||||||| |||||||||||| ||| | |||||| |
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|
| T |
7363676 |
agtagcatgcaattcttcttgatttcaatttttcagcttcatattgtcctaatttgttttccaattccttgtttctagactcacaatcctccaatttaga |
7363775 |
T |
|
| Q |
221 |
ggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttc |
320 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||| || ||||||| |||||||||||| ||| ||| | |||||||||| || |
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|
| T |
7363776 |
ggtcaattgtattttcatgtttgacaaacatgcaatattaaaattcaactcccctttctcagaagagaacttagtctgccaattatgcatttcagacatc |
7363875 |
T |
|
| Q |
321 |
aatttttgcacatcttgcttatg |
343 |
Q |
| |
|
||||||||||| |||| |||||| |
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|
| T |
7363876 |
aatttttgcacctctttcttatg |
7363898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 7363950 - 7364018
Alignment:
| Q |
416 |
ctccaattctgatttagccatattttccagtgccactttaagctgaccttgcaattgatgagtttcatg |
484 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| |||||||||||| ||||||| ||||||| ||||| |
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|
| T |
7363950 |
ctccaattctaatttagcaatattttttagtgccgctttaagctgactttgcaatagatgagtatcatg |
7364018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 12628516 - 12628325
Alignment:
| Q |
55 |
cttctatatcatgtattctttgaccaag---ttccctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctctt---gtttcaa |
148 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||||||||| ||||||||||||| |||| || ||||||||||||||||| || ||||| |||||| |
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|
| T |
12628516 |
cttctacatcatgttttctctgaccaaggtcttccctcaatgaactgatttcattgtgcaaaatcatttgttgagtagcattcaactcttcttgtttcat |
12628417 |
T |
|
| Q |
149 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcattt |
240 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||| |||||||| ||| || | ||||||| |||||||||||||||||| |
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|
| T |
12628416 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcataatcatccaatttagagatcaattgtattttcattt |
12628325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 55 - 330
Target Start/End: Complemental strand, 12622590 - 12622306
Alignment:
| Q |
55 |
cttctatatcatgtattctttgaccaagttc---cctcaaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctcttg---tttcaa |
148 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| ||||||| ||| |||| ||||| || | |||||||||||||||||| || ||||| ||||| |
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|
| T |
12622590 |
cttctatctcatgctttctctgaccaagttcttccctcaaataacagattgtatcttccaaagccatttgttgagtagcattcaactcttcatttttcat |
12622491 |
T |
|
| Q |
149 |
gttttcagcttcatatttacgtaatttgttttctaattccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaa |
248 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||| |||||||||| | ||| |||||||||||||||||| ||||||||| ||| | |
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|
| T |
12622490 |
cttttcagcttcatattgccttaatttgttttctaattcactgtttctagactcacagtcctccagtttagaggtcaattgttttttcatttcagac-at |
12622392 |
T |
|
| Q |
249 |
cttgcaatatca----aaattcagttcatctttctccaaagagaacttagcttgcaaatcaagcatttcagagttcaatttttgca |
330 |
Q |
| |
|
||||||| || || || |||||||||||||||||||||||||| | |||||||| ||| | ||||||||||||||||| |
|
|
| T |
12622391 |
cttgcaagtccatttgttctttagctcatctttctccaaagagaacttagcctccaaatcaaacatgtgagagttcaatttttgca |
12622306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 331
Target Start/End: Original strand, 30924113 - 30924357
Alignment:
| Q |
90 |
aaagaactgatttcatcttgcagaaccatttgttgagtagcatgcatctcttgtttc---aagttttcagcttcatatttacgtaatttgttttctaatt |
186 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| ||| ||||||| || ||||| |||| || |||||||||||| || | ||| |||||| ||||| |
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|
| T |
30924113 |
aaagaactaatttcgccttgcataaccattttttgtgtagcatacaactcttctttctccaaattttcagcttcacatcgccttaacttgtttgctaatg |
30924212 |
T |
|
| Q |
187 |
ccttgtttatagactcacaatactctagtttagaggtcaattgtattttcatttttgacaaacttgcaatatcaaaattcagttcatctttctccaaaga |
286 |
Q |
| |
|
| | || ||||||| || | ||| ||| | |||||||| ||| |||| |||| |||||| |||||||||||| ||| || || ||||||||| ||||| |
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|
| T |
30924213 |
aatggcttctagactcccattcctccagtgttgaggtcaactgtgtttttatttctgacaagcttgcaatatcagaatgcaattgatctttctcaaaaga |
30924312 |
T |
|
| Q |
287 |
gaacttagcttgcaaatcaagcatttcagagttcaatttttgcac |
331 |
Q |
| |
|
|||| || |||| |||| |||||||| |||| ||||||||| |
|
|
| T |
30924313 |
aaactgtgcctgcacatcatgcatttcatccttcagtttttgcac |
30924357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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