View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_13 (Length: 560)
Name: NF1213_low_13
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 251 - 511
Target Start/End: Original strand, 33143179 - 33143427
Alignment:
| Q |
251 |
aatacttgagaatgtaatgtaacattaggaattccggaagattacataatcaaacagatcaaagttaaataatacctgctcttggccctttgaaaagacg |
350 |
Q |
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| T |
33143179 |
aatacttgagaatgtaatgtaacattaggaattccggaagattacataatcgaacagatcaaagttaaataatacctgctcttggccctttgaaaagacg |
33143278 |
T |
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| Q |
351 |
attgggcgaaactgctggtccctttccatcaagtttggagccctgcgataataatcctctagatgtgcatcttttccttgagtttttgcatattcgagtg |
450 |
Q |
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| T |
33143279 |
attgggcgaaactgctggtccctttccatcaagtttggagccctgcgataataatcctctagatgtgcatc------------ttttgcatattcgagtg |
33143366 |
T |
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| Q |
451 |
aagcaacctctttgccatcaaacttgtcccatttccttccattgaaatccttcatatattt |
511 |
Q |
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| T |
33143367 |
aagcaacctctttgccatcaaacttgtcccatttcctcccattgaaatccttcatatattt |
33143427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 33143030 - 33143130
Alignment:
| Q |
95 |
catcatcttctaccaatgcaacaattaacactaggtactttctgaatgaagttcatagaacactctcaagtttgaggcatgtaaagctgctatatttctt |
194 |
Q |
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| T |
33143030 |
catcttcttctaccaatgcaacaattaacactaggtactttctgaatgaagttcatagaacactctcaagtttgaggcatgtaaagctgctatatttctt |
33143129 |
T |
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| Q |
195 |
t |
195 |
Q |
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| T |
33143130 |
t |
33143130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 33139352 - 33139421
Alignment:
| Q |
100 |
tcttctaccaatgcaacaattaacactaggtactttctgaatgaagttcatagaacactctcaagtttga |
169 |
Q |
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| T |
33139352 |
tcttctaccaatgcaagagttaatactaggtactttttgaatgaagttcatagaacactctcaagtttga |
33139421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 33143445 - 33143490
Alignment:
| Q |
506 |
atatttaagcatatgcaatagattcaatagaaactatcagaataat |
551 |
Q |
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| T |
33143445 |
atatttaagcatatgcaatagattcaatagaaactatcagaataat |
33143490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 33139435 - 33139482
Alignment:
| Q |
165 |
tttgaggcatgtaaagctgctatatttctttttgctgttcttcttctc |
212 |
Q |
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| T |
33139435 |
tttgaggcatataaagctgctatatttctttttattgttcttcttctc |
33139482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 33143128 - 33143158
Alignment:
| Q |
219 |
tttgtggaatgatattatcctgttcaaagtt |
249 |
Q |
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| T |
33143128 |
tttgtggaatgatattatcctgttcaaagtt |
33143158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 32342853 - 32342784
Alignment:
| Q |
100 |
tcttctaccaatgcaacaattaacactaggtactttctgaatgaagttcatagaacactctcaagtttga |
169 |
Q |
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||||||||||||||||| ||||||| ||| |||| ||||| |||||||||||||||||||||||||||| |
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| T |
32342853 |
tcttctaccaatgcaactgttaacaccagggacttcctgaaggaagttcatagaacactctcaagtttga |
32342784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 32349976 - 32349907
Alignment:
| Q |
100 |
tcttctaccaatgcaacaattaacactaggtactttctgaatgaagttcatagaacactctcaagtttga |
169 |
Q |
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||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
32349976 |
tcttctaccaatgcagttgttaattctaggtacttcctgaaggaagttcatagaacactctcaagtttga |
32349907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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