View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_18 (Length: 518)
Name: NF1213_low_18
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 210 - 400
Target Start/End: Complemental strand, 19596915 - 19596724
Alignment:
| Q |
210 |
gtaatattcggtgaagttctatgagttgttaattaattatattattgttgtttcagatttttgacattatcagacaattcaaagaagattgaggaatgaa |
309 |
Q |
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| T |
19596915 |
gtaatattcggtgaagttctatcagttgttaattaattatattattgttgtttcagatttttcacattatcagacaattcaaagaagattgaggaatgaa |
19596816 |
T |
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| Q |
310 |
tgaagaagattgaggagtgaataaagatgttcaaatttacatattagttacattttcaggagatatgatcatg-gaaatgttcatttcttca |
400 |
Q |
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| T |
19596815 |
tgaagaagattaaggagtgaataaagatattcaaatttacatattagttacattttcaggagatatgatcatgcaaaatgttcatttcttca |
19596724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 19597108 - 19596963
Alignment:
| Q |
15 |
tatcaccaccatcatcaccattacgaagagcatcacaatctaatgaacaacataatatgcagatcattgatccagttgaaatcttcatagcctttgccgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
19597108 |
tatcaccaccatcatcaccattacgaagagcatcgcaatctaatgaacaagataatatgcagatcattgatccaattgaaatcttcatagtctttgccgc |
19597009 |
T |
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| Q |
115 |
aacctcttgtgttttctatctttcttacgtggtaagggagttcatg |
160 |
Q |
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| T |
19597008 |
aacctcttgtgttttctatctttcttacgtggtaagggagttcatg |
19596963 |
T |
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