View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_2 (Length: 824)
Name: NF1213_low_2
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 420
Target Start/End: Original strand, 29272948 - 29273326
Alignment:
| Q |
28 |
catgttgctcattacagtgttccctgcaaggtggatagattgtagatctatattaagcagagaatnnnnnnnnnnnnnnnnnnnnccaacatatgaatca |
127 |
Q |
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| T |
29272948 |
catgttgctcattacagtgttccctgcaaggtggatagattgtagatctatattaagcagagaataaaaaaataaaaaataaaaaccaacatatgaatca |
29273047 |
T |
|
| Q |
128 |
atagagaactggatcgtggaatcataaataaaaagtcatatacatatctataatcttaacattgcgagctttactattctagagacatcttcctgtagga |
227 |
Q |
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| T |
29273048 |
atagagaactggatcgtggaatcataaataaaaaggcatatacatatctataatcttaac--------------tgttctagagacatcttcctgtagga |
29273133 |
T |
|
| Q |
228 |
ggggttgtttgcgctagatccaactccttgatggcccgttcttctttggggatttatgtcagtttctgtgttataattcaaaagctgcttcaagaagact |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29273134 |
ggggttgtttgcgctagatccaactccttgatggcccgttcttctttggggatttatgtcagtttctgtgttataattcaaaagctgcttcaagaagact |
29273233 |
T |
|
| Q |
328 |
tctttgtatggctttttcgcgcgttcccgacgttcatacggattgtgcagagattttagttggatttgtcagataatggggccggtacttgaa |
420 |
Q |
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| T |
29273234 |
tctttgtatggctttttcgcgcgttcccgacgttcatacggattgtgcagagattttagttggatttgtcagataatggggccggtacttgaa |
29273326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 540 - 747
Target Start/End: Original strand, 29273424 - 29273631
Alignment:
| Q |
540 |
gtgggcatgtctctcgccggatatttaagaggtgtttgtgtatcttccgaatccattcctgggttcaccgcatttcactgataaattgtgttattctgat |
639 |
Q |
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| T |
29273424 |
gtgggcatgtctctcgccggatatttaagaggtgtttgtgtatcttccgaatccattcctgggttcaccgcatttcactgataaattgtgttattctgat |
29273523 |
T |
|
| Q |
640 |
tttctgattcgaaggtaattccatggaggtggggtttaggtttgaattatttcttttgattttgtcaattggtgtctgattgcggttttgtcgtgatagt |
739 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29273524 |
tttctgattcgaaggtaattccatggaggtggggtttaggtttgaattatttcttttgattttgtcaattggtgtctgattgcggttttgtcgtgatagt |
29273623 |
T |
|
| Q |
740 |
gttctgtg |
747 |
Q |
| |
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|||||||| |
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| T |
29273624 |
gttctgtg |
29273631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 441 - 476
Target Start/End: Original strand, 29273325 - 29273360
Alignment:
| Q |
441 |
aattcgggtccataatttctttgtggtggggttaga |
476 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29273325 |
aattcgggtccataatttctttgtggtggggttaga |
29273360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 173 - 474
Target Start/End: Complemental strand, 55861500 - 55861198
Alignment:
| Q |
173 |
atctataatcttaacattgcgagctttactattctagagacatcttc-ctgtaggaggggttgtttgcgctagatccaactccttgatggcccgttcttc |
271 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55861500 |
atctataatcttaacattgcgagcttcactgttccagagagaactttactgtaggaggggttgtttgcgctagatccaactccttgatggcccgttcttc |
55861401 |
T |
|
| Q |
272 |
tttggggatttatgtcagtttctgtgttataattcaaaagctgcttcaagaagacttctttgtatggctttttcgcgcgttcccgacgttcatacggatt |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55861400 |
tttggggatttatgtcagtttctgtgttataattcaaaagctgcttcaagaagacttctttgtatgactttttcgcgcgttcccgacgttcatacggatt |
55861301 |
T |
|
| Q |
372 |
gtgcagagattttagttggatttgtcagataatggggccggtacttgaagaattttccagttgtacttcaattcgggtccataatttctttgtggtgggg |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55861300 |
gtgcagagattttagttggatttgtcagataatggggccggtacttgaagaattttccagttgtccttcaattcgggtccataatttctttgtggtgggg |
55861201 |
T |
|
| Q |
472 |
tta |
474 |
Q |
| |
|
||| |
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|
| T |
55861200 |
tta |
55861198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 540 - 747
Target Start/End: Complemental strand, 55861132 - 55860935
Alignment:
| Q |
540 |
gtgggcatgtctctcgccggatatttaagaggtgtttgtgtatcttccgaatccattcctgggttcaccgcatttcactgataaattgtgttattctgat |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55861132 |
gtgggcatgtctctcgccggatatttaagaggggtttgtgtatctttcgaatccattcctgggttcac----------tgataaattgtgttattctgat |
55861043 |
T |
|
| Q |
640 |
tttctgattcgaaggtaattccatggaggtggggtttaggtttgaattatttcttttgattttgtcaattggtgtctgattgcggttttgtcgtgatagt |
739 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55861042 |
tttctgattcgacggtaattccatggaggtggggtttaggtttgaattatttcttttgattttgtcaattggtgtctgattgcggttttgtcgtgatagt |
55860943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 9448464 - 9448525
Alignment:
| Q |
113 |
ccaacatatgaatcaatagagaactggatcgtggaatcataaataaaaagtcatatacatat |
174 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9448464 |
ccaacatatgaatcaacagagaactggatcgtggaatcataaataaaaaggcatatacatat |
9448525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 9448381 - 9448428
Alignment:
| Q |
45 |
tgttccctgcaaggtggatagattgtagatctatattaagcagagaat |
92 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| || ||||||||||| |
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|
| T |
9448381 |
tgttccctgcaaggtggataaattgaagatctagatcaagcagagaat |
9448428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 173 - 473
Target Start/End: Original strand, 16699834 - 16700134
Alignment:
| Q |
173 |
atctataatcttaacattgcgagctttactattctagagacatcttcctgtaggaggggttgtttgcgctagatccaactccttgatggcccgttcttct |
272 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||||| || |||||||||||| |||||||||||||||||||| |||| ||| | | |
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| T |
16699834 |
atctataatcttaacatagcgagctttactgttccagagacatcgtcatgtaggaggggtgatttgcgctagatccaactccaccatgggtggtt-tgat |
16699932 |
T |
|
| Q |
273 |
ttggggatttatgtcagtttctgtgttataattcaaaagctgcttcaagaagacttctttgtatggctttttcgcgcgttcccgacgttcatacggat-- |
370 |
Q |
| |
|
|| || ||||||||| | || ||| |||||||||||||||| | |||||||||||| || ||||||||||||||||||||||| ||| |||| ||| |
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|
| T |
16699933 |
ttaggaatttatgtcggattgtgtattataattcaaaagctacctcaagaagactttgctggatggctttttcgcgcgttcccgatgttaatacagattg |
16700032 |
T |
|
| Q |
371 |
tgtgcagagattttagttggatttgtcagataatggggccggtacttgaagaattttccagttgtacttcaattcgggtccataatttctttgtggtggg |
470 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||| ||| |||||||| || ||||| ||||||| ||||||| | ||||||||| | ||||||| |
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| T |
16700033 |
tgtgcatggattgtagttggatttgtcaggtaatgggaccgatacttgaa-aaatttccgacggtacttcgattcgggacaataatttctctatggtggg |
16700131 |
T |
|
| Q |
471 |
gtt |
473 |
Q |
| |
|
||| |
|
|
| T |
16700132 |
gtt |
16700134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 546 - 636
Target Start/End: Original strand, 16700207 - 16700297
Alignment:
| Q |
546 |
atgtctctcgccggatatttaagaggtgtttgtgtatcttccgaatccattcctgggttcaccgcatttcactgataaattgtgttattct |
636 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| || | ||||||||||||| |||| | ||||||| ||||||||||||||| |||| |
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|
| T |
16700207 |
atgtctctcgccggatatttaagcgttgtttgtgtgtcgttcgaatccattcctttgttctctgcatttcgctgataaattgtgttgttct |
16700297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 434 - 473
Target Start/End: Original strand, 3820898 - 3820937
Alignment:
| Q |
434 |
gtacttcaattcgggtccataatttctttgtggtggggtt |
473 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
3820898 |
gtacttcaattcgggtccataatttctctgtggtggggtt |
3820937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 25900990 - 25901068
Alignment:
| Q |
173 |
atctataatcttaacattgcgagctttactattctagagacatctt-cctgtaggaggggttgtttgcgctagatccaa |
250 |
Q |
| |
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||||||||||||||||| ||||||| || ||| ||||| ||||| ||||||| ||||||| |||| ||||||||||| |
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|
| T |
25900990 |
atctataatcttaacataccgagcttcgctgttccagagagatctttcctgtagaaggggttatttgtgctagatccaa |
25901068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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