View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_20 (Length: 514)
Name: NF1213_low_20
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 414 - 486
Target Start/End: Complemental strand, 7947012 - 7946940
Alignment:
| Q |
414 |
gagggtgaagtagtgcttacaggagcctaccaagagcatcaagtttatcctttccggagccactcggcccact |
486 |
Q |
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| T |
7947012 |
gagggtgaagtcgtgcttacaggagcctaccaagagcatcaattttgtcctttcctgagccacttggcccact |
7946940 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 32999228 - 32999174
Alignment:
| Q |
429 |
cttacaggagcctaccaagagcatcaagtttatcctttccggagccactcggccc |
483 |
Q |
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| T |
32999228 |
cttacaggagcctaccaagagcatcaattttattgtttccggagccactcggccc |
32999174 |
T |
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