View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_22 (Length: 501)

Name: NF1213_low_22
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_22
NF1213_low_22
[»] chr3 (9 HSPs)
chr3 (97-491)||(30411221-30411615)
chr3 (97-264)||(30408549-30408716)
chr3 (97-233)||(30421788-30421924)
chr3 (342-491)||(30408297-30408443)
chr3 (336-484)||(30421342-30421487)
chr3 (97-231)||(30404719-30404853)
chr3 (413-484)||(30404484-30404555)
chr3 (119-205)||(30401423-30401509)
chr3 (167-216)||(30388899-30388948)
[»] chr5 (1 HSPs)
chr5 (173-233)||(34150085-34150145)
[»] chr2 (1 HSPs)
chr2 (165-213)||(31445298-31445346)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 97 - 491
Target Start/End: Complemental strand, 30411615 - 30411221
Alignment:
Q  97 acttctaaacaaatgattatccaaacttccctcggccaaaaattcgtacacaaaaattcggtagctatcctctaatcagtaaccaatcagtttcacgaga 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411615 acttctaaacaaatgattatccaaacttccctcggccaaaaattcgtacacaaaaattcggtagctatcctctaatcagtaaccaatcagtttcacgaga 30411516  T
Q  197 ttaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatcagaattctcatctgtcataatctatttaatttg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411515 ttaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatcagaattctcatctgtcataatctatttaatttg 30411416  T
Q  297 ctaaagaaaataagtttcataaacttcaaaatgaaataataaaatgacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411415 ctaaagaaaataagtttcataaacttcaaaatgaaataataaaatgacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatc 30411316  T
Q  397 ttaacagcaacaacataaccagtaccttgtttagtaggagctagcttgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatc 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411315 ttaacagcaacaacataaccagtaccttgtttagtaggagctagcgtgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatc 30411221  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 30408716 - 30408549
Alignment:
Q  97 acttctaaacaaatgattatccaaacttccctcggccaaaaattcgtacacaaaaattcggtagctatcctctaatcagtaaccaatcagtttcacgaga 196  Q
    ||||||||||||||||||||||||| |||| | || || |||||| || || ||||| || |||  | ||||||| ||||||||||||||||||||||||    
T  30408716 acttctaaacaaatgattatccaaatttcctttggtcacaaattcatatactaaaatccgataggaaccctctaagcagtaaccaatcagtttcacgaga 30408617  T
Q  197 ttaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatca 264  Q
    ||||||||| ||||||||||||| |||||||||| ||||| || || |||||||||||| ||||||||    
T  30408616 ttaggatgacgcagctgcccaaggtaattgatttttgcctgaagtacaaggtttaattattctcatca 30408549  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 30421924 - 30421788
Alignment:
Q  97 acttctaaacaaatgattatccaaacttccctcggccaaaaattcgtacacaaaaattcggtagctatcctctaatcagtaaccaatcagtttcacgaga 196  Q
    |||||||||||||||||||||||||||||||| || || |||||| || || ||||| ||||||  ||||||||| |||||||| ||||||||||| |||    
T  30421924 acttctaaacaaatgattatccaaacttcccttggtcacaaattcatataccaaaatccggtagtcatcctctaagcagtaacctatcagtttcactaga 30421825  T
Q  197 ttaggatgatgcagctgcccaagataattgatttctg 233  Q
    || |||||||||||||| ||||| |||||||||||||    
T  30421824 tttggatgatgcagctgtccaaggtaattgatttctg 30421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 342 - 491
Target Start/End: Complemental strand, 30408443 - 30408297
Alignment:
Q  342 gacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatcttaacagcaacaacataaccagtaccttgtttagtaggagctagc 441  Q
    ||||||||||||||||||| | ||| ||   ||| ||||||| ||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||| ||    
T  30408443 gacactcaccaaccattcactatgttcc---tggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgc 30408347  T
Q  442 ttgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatc 491  Q
     |||||||||||||||||||||| || || |||||||| |||||||||||    
T  30408346 atgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatc 30408297  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 336 - 484
Target Start/End: Complemental strand, 30421487 - 30421342
Alignment:
Q  336 taaaatgacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatcttaacagcaacaacataaccagtaccttgtttagtagga 435  Q
    |||||||| |||||||||||||||| | ||||||   || |||||||||| | ||| | |||| ||||||| |||| ||||||||||| |||||||||||    
T  30421487 taaaatgagactcaccaaccattcactatgtccc---tgactgctttcttggttaagcctcttgacagcaataacaaaaccagtacctggtttagtagga 30421391  T
Q  436 gctagcttgtgctcatcgatccaccccttaaagacactaccaaacccac 484  Q
    |||||  |||||||||||||||| |||||||| |||| |||||| ||||    
T  30421390 gctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccac 30421342  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 30404853 - 30404719
Alignment:
Q  97 acttctaaacaaatgattatccaaacttccctcggccaaaaattcgtacacaaaaattcggtagctatcctctaatcagtaaccaatcagtttcacgaga 196  Q
    |||| |||||||| ||||||| |||||||||| ||  | |||||| || || ||||| | | |   ||||||||  || |||||||||| |||||| |||    
T  30404853 acttttaaacaaaagattatctaaacttcccttggtaagaaattcatataccaaaatccagcattcatcctctatgcaataaccaatcaatttcacaaga 30404754  T
Q  197 ttaggatgatgcagctgcccaagataattgatttc 231  Q
    ||||||||||||||||| || ||||||||||||||    
T  30404753 ttaggatgatgcagctgtcccagataattgatttc 30404719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 30404555 - 30404484
Alignment:
Q  413 aaccagtaccttgtttagtaggagctagcttgtgctcatcgatccaccccttaaagacactaccaaacccac 484  Q
    ||||||||||||||||||| || |||||  |||||||||||||||| |||||||| |||| |||||| ||||    
T  30404555 aaccagtaccttgtttagtcggggctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccac 30404484  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 30401509 - 30401423
Alignment:
Q  119 aaacttccctcggccaaaaattcgtacacaaaaattcggtagctatcctctaatcagtaaccaatcagtttcacgagattaggatga 205  Q
    |||||||||| | ||||| |||| || || |||||| |||||  ||||||||| ||||||||||||||| |||| ||||||||||||    
T  30401509 aaacttcccttgtccaaatattcatataccaaaattgggtagacatcctctaagcagtaaccaatcagtctcacaagattaggatga 30401423  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 30388948 - 30388899
Alignment:
Q  167 tctaatcagtaaccaatcagtttcacgagattaggatgatgcagctgccc 216  Q
    ||||| ||||||||||||||| |||| ||||||||||||  |||||||||    
T  30388948 tctaagcagtaaccaatcagtctcacaagattaggatgactcagctgccc 30388899  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 34150145 - 34150085
Alignment:
Q  173 cagtaaccaatcagtttcacgagattaggatgatgcagctgcccaagataattgatttctg 233  Q
    |||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||    
T  34150145 cagtaaccgatcagtttcacaagattaggatgatgcagctgtcccaggtaattgatttctg 34150085  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 31445346 - 31445298
Alignment:
Q  165 cctctaatcagtaaccaatcagtttcacgagattaggatgatgcagctg 213  Q
    ||||||| ||||||||||||||||| || |||||||||||| |||||||    
T  31445346 cctctaagcagtaaccaatcagtttgacaagattaggatgacgcagctg 31445298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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