View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1213_low_27 (Length: 467)
Name: NF1213_low_27
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_27 |
 | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 30 - 452
Target Start/End: Original strand, 37807658 - 37808075
Alignment:
| Q |
30 |
cttattgtgacaaaaatggactaaggaaaggcacatggacacccgaggaagacaaaaagttgattgcttatgtaactaggtatggctgttggaattggcg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807658 |
cttattgtgacaaaaatggactaaggaaaggcacatggacacccgaggaagacaaaaagttgattgcttatgtaactaggtatggctgttggaattggcg |
37807757 |
T |
|
| Q |
130 |
acaattacctaaatttgcaggtatagaaaagttattacagttaatagtttatgtgtgttgtatttcttttagtttttgtgctatatatcttggaattcag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807758 |
acaattacctaaatttgcaggtatagaaaagttattacagttaatagtttatgtgtgttgtatttcttttagtttttgtgctatatatcttggaattcag |
37807857 |
T |
|
| Q |
230 |
tacttaatttgtttgcaggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807858 |
tacttaatttgtttgcaggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtca |
37807957 |
T |
|
| Q |
330 |
tgaagaagaagagactatcatcaaacttcatgaaaaattgggtaataggtacgtacgtatatatcaacacaataataatgatatttaagatatatcatac |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | |
|
|
| T |
37807958 |
tgaagaagaagagactatcatcaaacttcatgaaaaattgggtaataggtacgtacgtatgtatcaacacaataataatgatatttgtg-tatat----c |
37808052 |
T |
|
| Q |
430 |
ataaacctattaaatcactctat |
452 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37808053 |
ataaacctattaaatcactctat |
37808075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 238 - 380
Target Start/End: Original strand, 37789204 - 37789346
Alignment:
| Q |
238 |
ttgtttgcaggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaag |
337 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| | ||| |||| | |
|
|
| T |
37789204 |
ttgttttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaacttcaatcaacaagagg |
37789303 |
T |
|
| Q |
338 |
aagagactatcatcaaacttcatgaaaaattgggtaataggta |
380 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37789304 |
aagagcttatcatcaaacttcatgaaaaactgggtaataggta |
37789346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 37788697 - 37788817
Alignment:
| Q |
34 |
ttgtgacaaaaatggactaaggaaaggcacatggacacccgaggaagacaaaaagttgattgcttatgtaactaggtatggctgttggaattggcgacaa |
133 |
Q |
| |
|
||||||||| |||||| | || ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37788697 |
ttgtgacaataatggattgagaaaaggttcatggacacatgaggaagacaaaaagttgattgcttatgttactaggtatggctgttggaattggcgacaa |
37788796 |
T |
|
| Q |
134 |
ttacctaaatttgcaggtata |
154 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
37788797 |
ctacctagatttgcaggtata |
37788817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 9870 - 9952
Alignment:
| Q |
256 |
aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaaga |
338 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||| | ||||| ||| |||||||| |
|
|
| T |
9870 |
aggtgtgggaagagttgtagattgaggtggttgaattatctaaggcctaatatcaaaagaggaaactttactcaagaagaaga |
9952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 262106 - 262026
Alignment:
| Q |
245 |
caggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagcttta |
325 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||| |||| ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
262106 |
caggtctttcaaggtgtgggaagagttgtagattgaggtggctgaattatctaaggcctaatatcagaagagggaacttta |
262026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 237226 - 237133
Alignment:
| Q |
245 |
caggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaaga |
338 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||| |||| ||| |||| || ||||||||||||| | ||| | ||| |||||||| |
|
|
| T |
237226 |
caggtctttcaaggtgtgggaagagttgtagattgaggtggctgaattatttaagacctaatatcaaaagaggaaacttcactcaagaagaaga |
237133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 41544258 - 41544340
Alignment:
| Q |
237 |
tttgtttgcaggtcttgaa-aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagaggga |
319 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||| || ||||| |||||||||||||| || || ||||||| ||||||| |
|
|
| T |
41544258 |
tttgtttgcaggt-ttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagaggga |
41544340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 34357708 - 34357760
Alignment:
| Q |
259 |
tgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaa |
311 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
34357708 |
tgtgggaagagttgtcgtctaagatggttgaactatttaaggcctaatatcaa |
34357760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 4610946 - 4610890
Alignment:
| Q |
256 |
aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaa |
312 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||| ||||| |||||||| |||||| |
|
|
| T |
4610946 |
aggtgtgggaagagttgccgtctaaggtggctgaattatctgaggccagacatcaaa |
4610890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University