View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_29 (Length: 445)
Name: NF1213_low_29
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 30276605 - 30276969
Alignment:
| Q |
1 |
taagagcttctaattcgcttggcggagatggtacgacaaaatctatagattcttcaagggttgagtttatggacaatatcttaggatatatgcgatcttt |
100 |
Q |
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| T |
30276605 |
taagagcttctaattcgcttggcggagatggtacgacaaaatctatagattcttcaagggttgagtttatggacaatatcttaggatatatgcgatcttt |
30276704 |
T |
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| Q |
101 |
aagatctttgactaacatttgatgggataagaagtgactttctaggtgcacaagctcattttccactcctgtcacttcctctagtattctacacatgaga |
200 |
Q |
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| T |
30276705 |
aagatctttgactaacatttgatgggataagaagtgattctctaagtgcacaagctcattctccactcctgtcacttcctctagtattctacacatgaga |
30276804 |
T |
|
| Q |
201 |
aaacaaagataagtacctcaacattatatgccattcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276805 |
aaacaaagataagtacctcaacattatatgccattcaacaataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaa |
30276904 |
T |
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| Q |
301 |
catgcaggaatatccttcataaacatgaatgaacaatactagtccttcactttttataagcccct |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30276905 |
catgcaggaatatccttcataaacatgaatgaacaatactagtccttctctttttataagcccct |
30276969 |
T |
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