View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_3 (Length: 745)
Name: NF1213_low_3
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 162 - 640
Target Start/End: Original strand, 27328409 - 27328886
Alignment:
| Q |
162 |
taaacctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtccaccaccc |
261 |
Q |
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| T |
27328409 |
taaagctaaaacctcacattcacaacactttcttgcttgatcgtcggtttgtaaatacaatacatcgtcttgttgagatgctgctcattgtccaccaccc |
27328508 |
T |
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| Q |
262 |
agtaatccttcaaacttaagatcttaggtcagtaaggatctgttatcactcgtgtgtcagaccactcctaaaatttctagcttcgtaataattatggttg |
361 |
Q |
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| T |
27328509 |
agtaatccttcaaacttaagatcttaggtctggaaggatcagttatcactcgtgtgtccaaccactcctaaaatttctagcttcgtaataattatggttg |
27328608 |
T |
|
| Q |
362 |
gttgcataggacgtgataattgcttttatatcaaacaactaacacataccaggcataacctagtttaagtagaacatgaatttggtgttgtaccnnnnnn |
461 |
Q |
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| T |
27328609 |
gttgcataggacgtgataattgcttttatatcaaacaactagcacataccaggcataacctagtttaagtagaacatgaatttggtgttgtaccaaaaaa |
27328708 |
T |
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| Q |
462 |
nttaaaagaacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaa |
561 |
Q |
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| T |
27328709 |
a-aaaaagaacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataaaagcttgatccgatccaacatacttacatgcaaa |
27328807 |
T |
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| Q |
562 |
attaggtcgtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctactatgacaccatcac |
640 |
Q |
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| T |
27328808 |
attaggtcgtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctactatgacaccatcac |
27328886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 27328295 - 27328414
Alignment:
| Q |
8 |
caccacagacacactcgaacatgatcgttgatcatattatcaagattgtttgcagctgtccattcagacagctgt-----ccaggattttggatcctaaa |
102 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||| |
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| T |
27328295 |
caccatagacacactcgaacatgatcgttgatcatattatcaagattgtttgcagctgtc----cgaacagctgtctaagctaggattttggatcctaaa |
27328390 |
T |
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| Q |
103 |
acattaattcttccactataaagc |
126 |
Q |
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| T |
27328391 |
acattaattcctccactataaagc |
27328414 |
T |
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