View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1213_low_31 (Length: 443)
Name: NF1213_low_31
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 17202659 - 17202844
Alignment:
| Q |
10 |
attattctgcaaattagtatcaacattttggatatnnnnnnntttagactttggaagacttatagcctagccagaagttgcctcatacttgaaagaatat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17202659 |
attattctgcaaattagtatcaacattttggatataaaaaaatttagactttggaagacttatagcctagccagaagctgcctcatacttaaaagaatat |
17202758 |
T |
|
| Q |
110 |
tcttcattatgtgtgatttcatccctgttgtgaattgttcttattttattgaaaagttaactaagtttttaattgataacttagat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
17202759 |
tcttcattatgtgtgatttcatccctgttgtgaattgctcttattttattgaaaatttaactgactttttaattgataacttagat |
17202844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 256 - 414
Target Start/End: Original strand, 17202901 - 17203058
Alignment:
| Q |
256 |
tctaacataaaagagtgtatcatctttatatatcattatagaagtaaataaacgaacaaacagacatgatgtccatcttaatgcatgctagttttctata |
355 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17202901 |
tctaacataaaa-agtgtatcatctttatatatcattatagaagtaaataaacgaacaaacagacatgatgtccatcttaacgcatgctagttttctata |
17202999 |
T |
|
| Q |
356 |
gtttaaaaatcttcttttagttaatttcacttgtttatgaactaaattagtgagaaagt |
414 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
17203000 |
gtttaaagatctccttttagttaatttcactgggttatgaactaaattagtaagaaagt |
17203058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 35390538 - 35390490
Alignment:
| Q |
143 |
attgttcttattttattgaaaagttaactaagtttttaattgataactta |
192 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
35390538 |
attgttcttattttaatgaaac-ttaactaattttttaattgataactta |
35390490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University