View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_32 (Length: 442)
Name: NF1213_low_32
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 34 - 368
Target Start/End: Complemental strand, 43109779 - 43109445
Alignment:
| Q |
34 |
tttgttactcaactttatcaactaattgaatgaaatgtactccatttttcaggtcttgcagttgtggagttggaattccaccaccgtgtctatgtagcta |
133 |
Q |
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| T |
43109779 |
tttgttactcaactttatcaactaattgaatgaaatgtactccaattttcaggtcttgcagctgtggagttggaattccaccaccgtgtctatgtagcta |
43109680 |
T |
|
| Q |
134 |
gagctgaaaagtcatggaaacaaattgcaagttccctgcagttcatattgggttgcaacattgagctcagaatcaaccatgttccatgtactacagattc |
233 |
Q |
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| T |
43109679 |
gagctgaaaagtcatggaaacaaattgcaagttccctacagttcatattgggttgcaacattgagctcagaatcaaccatgttccatgtactacagattc |
43109580 |
T |
|
| Q |
234 |
taagtatgctaggttgaagaggtcatctttcaatttcttcaattgttcgcgcaggattcttcggaaatcattatcatccgatgaacatggatgtgaatca |
333 |
Q |
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| T |
43109579 |
taagtatgctaggttgaagaggtcatctttcaatttcttcaattgttcgcgcaggattcttcggaaatcattatcatccgatgaacaaggatgtgaatca |
43109480 |
T |
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| Q |
334 |
gactatgctgattgcacttctcaaaagcctatgat |
368 |
Q |
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| T |
43109479 |
gactatgctgattgcacttctcaaaagcctatgat |
43109445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 4372825 - 4372792
Alignment:
| Q |
6 |
acaaagtttcttgtccgaaattcaaacctttgtt |
39 |
Q |
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| T |
4372825 |
acaaagtttcttgtccgaaattcaaacctttgtt |
4372792 |
T |
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