View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_37 (Length: 419)
Name: NF1213_low_37
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 30 - 401
Target Start/End: Original strand, 16830697 - 16831060
Alignment:
| Q |
30 |
gtaaaaagttatacagatgcatccaataatatctcgttatcgtgacactttactatgttagtttttaaaatatctcgacaattatctatctacttagtga |
129 |
Q |
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| T |
16830697 |
gtaaaaagttatacagatgcatccaataacatctcgttatcgtgacactttactatgttagtttttaaaatatctcgacaattatcta----cttagtga |
16830792 |
T |
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| Q |
130 |
gatgtaacgggatgcatgtgtgaaagttttttactcaacaattatctacttagttttttaaagtccatggtttgtttaacggtgcatgagttgtgggtta |
229 |
Q |
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| T |
16830793 |
gatgtaatgggatgcatgtgtgaaagttttttactcaacaattatctacttagttttttaatgtccatggtttgttt----gtgcatgagttgtgggtta |
16830888 |
T |
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| Q |
230 |
aaaaatttattttcacaaagtttctatggttgaaaaatcattacactgtcgtactcatacacttctttatatgcttccaatatgtgtgttgttactatat |
329 |
Q |
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| T |
16830889 |
aaaaatttattttcacaaagtttctatggttgaaaaatcattacactgtcgtactcatacacttctttatatgcttccaatatgtgtgttgttactatat |
16830988 |
T |
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| Q |
330 |
gtactaataaatagaaaaacaaactaaataatattttcgttctaaagttaactcattaatgatagtgtggaa |
401 |
Q |
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| T |
16830989 |
gtactaataaatagaaaaacaaactaaataatattttcgttctaaagttaactcattaatgatagtgtggaa |
16831060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 401
Target Start/End: Original strand, 16832732 - 16832944
Alignment:
| Q |
195 |
catggtttgtttaacggtgcatgagttgtgggttaaaaaatttattttcacaaagtttctatggttgaa---aaatcattacactgtcgtactcatacac |
291 |
Q |
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| T |
16832732 |
catggtttgtttaacagtgcatgatttgtggtctaaaaaacc-attttcacaaagtttccatgattgaataaaaaacgttacattgtcctactgatagat |
16832830 |
T |
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| Q |
292 |
ttcttt-atatgcttccaatatgtgtgttgttactat---atgtactaataaatagaaaaacaaactaaataatattttcgttctaaagttaactcatta |
387 |
Q |
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| T |
16832831 |
tttttttatatgctttcattatgtgtgttgttattattatatgtactaacaaatagataaacaaactaaataatattttcattcttagtttaactcatta |
16832930 |
T |
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| Q |
388 |
atgatagtgtggaa |
401 |
Q |
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| T |
16832931 |
atgatagtgtggaa |
16832944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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