View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_38 (Length: 418)

Name: NF1213_low_38
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_38
NF1213_low_38
[»] chr8 (12 HSPs)
chr8 (1-410)||(28252220-28252645)
chr8 (71-135)||(16052402-16052466)
chr8 (69-135)||(24120155-24120221)
chr8 (74-135)||(22894659-22894720)
chr8 (85-123)||(11310341-11310379)
chr8 (70-119)||(10866913-10866962)
chr8 (76-135)||(6358629-6358688)
chr8 (70-103)||(5570305-5570338)
chr8 (87-135)||(12956431-12956479)
chr8 (87-135)||(14977232-14977280)
chr8 (75-119)||(30851240-30851284)
chr8 (77-125)||(32239219-32239267)
[»] chr5 (8 HSPs)
chr5 (70-135)||(24841678-24841743)
chr5 (70-137)||(11274454-11274520)
chr5 (70-137)||(17027452-17027519)
chr5 (85-135)||(17382160-17382210)
chr5 (77-135)||(25594817-25594875)
chr5 (76-125)||(22967977-22968026)
chr5 (70-103)||(12029545-12029578)
chr5 (91-135)||(30790727-30790771)
[»] chr1 (7 HSPs)
chr1 (70-135)||(23223336-23223401)
chr1 (73-125)||(30675411-30675463)
chr1 (78-135)||(25777956-25778013)
chr1 (77-125)||(12424050-12424097)
chr1 (77-135)||(25730696-25730754)
chr1 (77-125)||(12810256-12810302)
chr1 (75-119)||(26101987-26102031)
[»] chr6 (5 HSPs)
chr6 (77-125)||(12974270-12974318)
chr6 (79-135)||(30355260-30355316)
chr6 (78-125)||(15576297-15576344)
chr6 (70-125)||(16527821-16527876)
chr6 (70-100)||(1755712-1755742)
[»] chr2 (8 HSPs)
chr2 (71-135)||(28278548-28278611)
chr2 (76-135)||(21505264-21505323)
chr2 (77-119)||(18236443-18236485)
chr2 (70-135)||(31449882-31449947)
chr2 (70-119)||(39730372-39730421)
chr2 (70-116)||(29769614-29769660)
chr2 (89-135)||(32619586-32619632)
chr2 (89-125)||(19949690-19949725)
[»] chr4 (8 HSPs)
chr4 (76-135)||(5906845-5906905)
chr4 (80-135)||(12111455-12111510)
chr4 (79-135)||(15192137-15192193)
chr4 (70-125)||(1676430-1676485)
chr4 (70-125)||(1682958-1683013)
chr4 (70-119)||(10576378-10576427)
chr4 (85-125)||(10320354-10320394)
chr4 (93-125)||(34864426-34864458)
[»] chr7 (11 HSPs)
chr7 (70-128)||(20470942-20471000)
chr7 (77-135)||(29544451-29544509)
chr7 (77-137)||(7142030-7142090)
chr7 (70-125)||(9761541-9761595)
chr7 (70-125)||(9802000-9802054)
chr7 (73-128)||(22532775-22532830)
chr7 (77-124)||(23124833-23124880)
chr7 (72-125)||(7494638-7494691)
chr7 (78-135)||(18496498-18496555)
chr7 (77-125)||(21545933-21545984)
chr7 (79-119)||(2353381-2353421)
[»] chr3 (7 HSPs)
chr3 (71-125)||(13911191-13911245)
chr3 (77-125)||(17637035-17637083)
chr3 (72-135)||(21017803-21017867)
chr3 (70-117)||(8402693-8402740)
chr3 (178-241)||(26892085-26892148)
chr3 (77-125)||(19219346-19219394)
chr3 (77-121)||(25919603-25919647)
[»] scaffold0002 (1 HSPs)
scaffold0002 (77-125)||(446937-446984)
[»] scaffold0386 (2 HSPs)
scaffold0386 (77-128)||(8841-8892)
scaffold0386 (92-128)||(13203-13239)
[»] scaffold0282 (1 HSPs)
scaffold0282 (70-135)||(22670-22735)
[»] scaffold0188 (1 HSPs)
scaffold0188 (86-135)||(27079-27128)
[»] scaffold0171 (1 HSPs)
scaffold0171 (77-125)||(6128-6176)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 28252645 - 28252220
Alignment:
Q  1 agtaattttgttcaatctaacagtctttagaggtattgggttgttaggttgtgagaactcacctaagag-----ggggttgtgatgacggagcatcatat 95  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||     ||||||||||||| ||||||||||||    
T  28252645 agtaattttgttcaatctaacagactttagaggtattgggttgttaggttgtgagaactcacctaacagattagggggttgtgatgaaggagcatcatat 28252546  T
Q  96 gatattttttgctatgtttttagtacttttattcgcatttaa----------gatgagagttagaagagatgtcaatgcagaatatttcatgataacttc 185  Q
    ||||||||||| |||||||||| |||||||||||| ||||||          ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28252545 gatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttagaagagatgtcaatgcagaatattccatgataacttc 28252446  T
Q  186 aaattacttgcattgttgagactaattaaagatctcatgttgagacaaccttgatcaacaagtctacatatcttcttcaaagaaattatagctatttttc 285  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28252445 aaattacttgcattgttgagcctaattagagatctgatgttgagacaacctttatcaacaagtctacatatcttcttcaaagaaattatagcaatttttc 28252346  T
Q  286 atagcatatatgttgaataaatccttaagagaattcaaacctgagctttcttctttgtagtatatcatcaaatcatcaacataaaaagagagaga-atgt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  28252345 atagcatatatgttgaataaatccttaagagaattcaaacctgagctttcttctttgtagtatataatcaaatcatcaacataaaaagagagagagatgt 28252246  T
Q  385 attgagatgttccttgtccctatgat 410  Q
    ||| ||||||||||||||||| ||||    
T  28252245 attcagatgttccttgtccctttgat 28252220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 16052466 - 16052402
Alignment:
Q  71 gggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  16052466 gggttgtgatgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcattt 16052402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 24120155 - 24120221
Alignment:
Q  69 gggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||||    
T  24120155 gggggttgtgatgacgaatcatcatatgatattttttgctatgtttttagtacttttctttgcattt 24120221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 22894720 - 22894659
Alignment:
Q  74 ttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||| ||||||||||||| |||||| | |||||||||||||||||| |||||||||    
T  22894720 ttgtgatgacagagcatcatatgacatttttaggtatgtttttagtacttttcttcgcattt 22894659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 11310379 - 11310341
Alignment:
Q  85 gagcatcatatgatattttttgctatgtttttagtactt 123  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11310379 gagcatcatatgatattttttgctatgtttttagtactt 11310341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 10866913 - 10866962
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagt 119  Q
    ||||||||||||| ||| ||||||||||||||||||| |||| |||||||    
T  10866913 ggggttgtgatgatggaacatcatatgatattttttggtatgattttagt 10866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 6358629 - 6358688
Alignment:
Q  76 gtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||| |||||  |||||| |||||  ||||||||||||||||||||||| ||||||    
T  6358629 gtgatgacagagcactatatgacattttgggctatgtttttagtacttttatttgcattt 6358688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 5570338 - 5570305
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatatttt 103  Q
    ||||||||||| ||||||||||||||||||||||    
T  5570338 ggggttgtgataacggagcatcatatgatatttt 5570305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 12956431 - 12956479
Alignment:
Q  87 gcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||| ||||||||||  ||||||||||||||||||| || ||||||    
T  12956431 gcatcatgtgatatttttgtctatgtttttagtacttttctttgcattt 12956479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 14977280 - 14977232
Alignment:
Q  87 gcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||||||||||||||  |||||||||||| |||||| || ||||||    
T  14977280 gcatcatatgatatttttaactatgtttttagcacttttctttgcattt 14977232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 30851284 - 30851240
Alignment:
Q  75 tgtgatgacggagcatcatatgatattttttgctatgtttttagt 119  Q
    |||||||| ||| | ||||||||||||||| ||||||||||||||    
T  30851284 tgtgatgatggaacgtcatatgatatttttggctatgtttttagt 30851240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 32239219 - 32239267
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||| || ||||| |||||||||||| ||||||||||||| ||||||    
T  32239219 tgatgatggtgcatcgtatgatatttttggctatgtttttagcactttt 32239267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 24841678 - 24841743
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||| || || ||||||    
T  24841678 ggggttgtgatgacagagcatcatatgacattttttgctatgtttttagtactattctttgcattt 24841743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 11274520 - 11274454
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcatttaa 137  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| || ||||||||    
T  11274520 ggggttgtgatgaaggagcatcatttgatattttttgctat-tttttagtacttttctttgcatttaa 11274454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 17027452 - 17027519
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcatttaa 137  Q
    |||||||||| || |||||||||||||| |||||| |||||||||||||||||||| || ||||||||    
T  17027452 ggggttgtgacgagggagcatcatatgacatttttggctatgtttttagtacttttctttgcatttaa 17027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 17382210 - 17382160
Alignment:
Q  85 gagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcattt 17382160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 25594875 - 25594817
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||| |||||||||||  ||||||| ||||||||||||||||||||||| ||||||    
T  25594875 tgatgacagagcatcatatattatttttggctatgtttttagtacttttatttgcattt 25594817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 22968026 - 22967977
Alignment:
Q  76 gtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||||||| |||||||||||||||  ||||||||||||||| ||||    
T  22968026 gtgatgacggagtatcatatgatattttaggctatgtttttagtagtttt 22967977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 12029545 - 12029578
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatatttt 103  Q
    |||||||||||||| |||||||||||||||||||    
T  12029545 ggggttgtgatgaccgagcatcatatgatatttt 12029578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 30790727 - 30790771
Alignment:
Q  91 catatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||| |||||||||||||||||||||||  ||||||| ||||||    
T  30790727 catataatattttttgctatgtttttagttattttatttgcattt 30790771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 23223336 - 23223401
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| || ||||||    
T  23223336 ggggttgtgatgacggagcatcatatgatgtttttggctatgttttaagtacttttctttgcattt 23223401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 30675411 - 30675463
Alignment:
Q  73 gttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  30675411 gttgtgatgacagagcatcatatgacattttttgctatgtttttagaactttt 30675463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 25778013 - 25777956
Alignment:
Q  78 gatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||| ||||||||||||||||||||||||| ||||| ||||| || ||||||    
T  25778013 gatgacggagtatcatatgatattttttgctatgttcttagtgcttttctttgcattt 25777956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 12424097 - 12424050
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  12424097 tgatgacagagcatcatatgata-ttttggctatgtttttagtactttt 12424050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 25730754 - 25730696
Alignment:
Q  77 tgatgacggagcatcatatgatatt-ttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||||| || ||||||    
T  25730754 tgatgacagagcatcatatgatatttttttgctatg-ttttagtacttttctttgcattt 25730696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 12810256 - 12810302
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||| ||||||||  |||||||||| |||||||||||||||||||    
T  12810256 tgatgacgaagcatcat--gatattttttactatgtttttagtactttt 12810302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 26101987 - 26102031
Alignment:
Q  75 tgtgatgacggagcatcatatgatattttttgctatgtttttagt 119  Q
    |||||||| ||||||||||||||||||||  || |||||||||||    
T  26101987 tgtgatgatggagcatcatatgatattttaggcgatgtttttagt 26102031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 12974270 - 12974318
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12974270 tgatgacggagcatcatatgatattttttgctatggttttagtactttt 12974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 30355260 - 30355316
Alignment:
Q  79 atgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  30355260 atgacggagcatcatatgatatttttggctatgtttttagtacttttacttgcattt 30355316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 15576344 - 15576297
Alignment:
Q  78 gatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  15576344 gatgatggagcatcatatgatatttttggctatgtttttagtactttt 15576297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 16527821 - 16527876
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||    
T  16527821 ggggttgtgatggcagagcatcatataatatttttggctatgtttttagtactttt 16527876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 1755742 - 1755712
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatat 100  Q
    |||||||||||||||||||||||||||||||    
T  1755742 ggggttgtgatgacggagcatcatatgatat 1755712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 28278611 - 28278548
Alignment:
Q  71 gggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  28278611 gggttgtgatgacagagcatcatatgatattttttgctatg-ttttagtacttttctttgcattt 28278548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 21505323 - 21505264
Alignment:
Q  76 gtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||    
T  21505323 gtgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcattt 21505264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 18236485 - 18236443
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagt 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  18236485 tgatgacggagcatcatatgatattttatgctatgtttttagt 18236443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 31449882 - 31449947
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||||||||| |||| ||| |||||||||||  ||||||||||||||  ||||||| ||||||    
T  31449882 ggggttgtgatgatggagtatcttatgatattttaagctatgtttttagttattttatttgcattt 31449947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 39730372 - 39730421
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagt 119  Q
    |||||||||||| ||||||||||||| |||||||  ||||||||||||||    
T  39730372 ggggttgtgatggcggagcatcatataatattttaggctatgtttttagt 39730421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 29769614 - 29769660
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgttttt 116  Q
    |||||| ||||||||||||||||||| |||||||  |||||||||||    
T  29769614 ggggttatgatgacggagcatcatataatattttaggctatgttttt 29769660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 32619586 - 32619632
Alignment:
Q  89 atcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||||||||| ||||| |||||||||||||| || ||||||    
T  32619586 atcatatgatatttttggctatatttttagtacttttctttgcattt 32619632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 19949725 - 19949690
Alignment:
Q  89 atcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||||||| |||||||||||||||||||    
T  19949725 atcatatgatatttttt-ctatgtttttagtactttt 19949690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 5906905 - 5906845
Alignment:
Q  76 gtgatgacggagcatcatatgatat-tttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5906905 gtgatgacgaaacatcatatgatatatttttgctatgtttttagtacttttatttgcattt 5906845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 12111510 - 12111455
Alignment:
Q  80 tgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  12111510 tgacagagcatcatatgacattttttgttatgtttttagtacttttatttgcattt 12111455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 15192137 - 15192193
Alignment:
Q  79 atgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||| ||||||||||||| |||||||| ||||||||| |||||||| || ||||||    
T  15192137 atgacagagcatcatatgacattttttgttatgtttttcgtacttttctttgcattt 15192193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 1676485 - 1676430
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||||| |||||||||||| |||||| | ||| ||||| ||||||||    
T  1676485 ggggttgtgatgacgaagcatcatatgacatttttggttatattttttgtactttt 1676430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 1683013 - 1682958
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||||| |||||||||||| |||||| | ||| ||||| ||||||||    
T  1683013 ggggttgtgatgacgaagcatcatatgacatttttggttatattttttgtactttt 1682958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 10576378 - 10576427
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagt 119  Q
    ||||||||||||| |||| |||||||||||||||   |||||||||||||    
T  10576378 ggggttgtgatgatggagtatcatatgatattttagactatgtttttagt 10576427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 10320394 - 10320354
Alignment:
Q  85 gagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||| |||||| ||||||||||||||| ||||    
T  10320394 gagcatcatatgacatttttcgctatgtttttagtaatttt 10320354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 34864458 - 34864426
Alignment:
Q  93 tatgatattttttgctatgtttttagtactttt 125  Q
    |||||||||||||| ||||||||||||||||||    
T  34864458 tatgatattttttgttatgtttttagtactttt 34864426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 20471000 - 20470942
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttatt 128  Q
    ||||||||||||||| ||||||||||||  ||||| ||| |||||||||||||||||||    
T  20471000 ggggttgtgatgacgaagcatcatatgaattttttggctttgtttttagtacttttatt 20470942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 29544451 - 29544509
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||| ||||||||||||||||||||| |||||||||||| || |||| || ||||||    
T  29544451 tgatgaaggagcatcatatgatatttttggctatgtttttattaattttctttgcattt 29544509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 7142030 - 7142090
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcatttaa 137  Q
    ||||||| ||||||||||||| |||||| |||||||||||| || |||| || ||||||||    
T  7142030 tgatgacagagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaa 7142090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 9761595 - 9761541
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||||||||| ||||||||||||| | |||| |||| |||||||||||||||    
T  9761595 ggggttgtgatgacagagcatcatatgaca-ttttggctacgtttttagtactttt 9761541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 9802054 - 9802000
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||||||||| ||||||||||||| | |||| |||| |||||||||||||||    
T  9802054 ggggttgtgatgacagagcatcatatgaca-ttttggctacgtttttagtactttt 9802000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 22532830 - 22532775
Alignment:
Q  73 gttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttatt 128  Q
    ||||| |||| ||||||||||||||||||||  ||||||||||||||  |||||||    
T  22532830 gttgtaatgatggagcatcatatgatattttaggctatgtttttagttattttatt 22532775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 23124833 - 23124880
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtacttt 124  Q
    |||||| |||||||||| ||| ||||||| ||||||||||||||||||    
T  23124833 tgatgatggagcatcatctgacattttttactatgtttttagtacttt 23124880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 7494638 - 7494691
Alignment:
Q  72 ggttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||||||  |||||||| ||||||||||| |||||  |||||||||||||    
T  7494638 ggttgtgatgaatgagcatcacatgatatttttggctattcttttagtactttt 7494691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 18496498 - 18496555
Alignment:
Q  78 gatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||| |||||| |||||||||||||  ||||||||||||||| |||| || ||||||    
T  18496498 gatgatggagcaccatatgatattttaggctatgtttttagtagttttctttgcattt 18496555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 21545984 - 21545933
Alignment:
Q  77 tgatgacggagcat---catatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||||   ||||||||||||||  |||||||||||||||||||    
T  21545984 tgatgacggagcatgatcatatgatatttttgactatgtttttagtactttt 21545933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 2353421 - 2353381
Alignment:
Q  79 atgacggagcatcatatgatattttttgctatgtttttagt 119  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  2353421 atgacggagcatcgtatgatattttaggctatgtttttagt 2353381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 13911191 - 13911245
Alignment:
Q  71 gggttgtgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||||| ||||    
T  13911191 gggttgtgatgacggagaatcaaatgatatttttttctatgtttttagtaatttt 13911245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 17637035 - 17637083
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||||||||||||||||| |||||| ||||||||| || |||||||    
T  17637035 tgatgacggagcatcatatgacatttttggctatgtttatattactttt 17637083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 21017803 - 21017867
Alignment:
Q  72 ggttgtgatgacggagcatcatatgata-ttttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||||| || ||||||||||||||| ||||||| ||||||||||||| |||| || ||||||    
T  21017803 ggttgtgataacagagcatcatatgatatttttttgttatgtttttagtatttttctttgcattt 21017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 8402740 - 8402693
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgttttta 117  Q
    |||||||||||||| |||||||||||||||||||   |||||||||||    
T  8402740 ggggttgtgatgacagagcatcatatgatattttagactatgttttta 8402693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 26892148 - 26892085
Alignment:
Q  178 ataacttcaaattacttgcattgttgagactaattaaagatctcatgttgagacaaccttgatc 241  Q
    |||| ||||||||| |||||||| ||| ||||||||||||| | |||||||| | |||||||||    
T  26892148 ataatttcaaattatttgcattgctgacactaattaaagatttgatgttgaggccaccttgatc 26892085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 19219394 - 19219346
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||| |||||||||||||| |||| ||| ||||||||||| ||||    
T  19219394 tgatgacgaagcatcatatgatacttttagctgtgtttttagtattttt 19219346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 25919647 - 25919603
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtac 121  Q
    |||||| ||||||||||||||||||| | | ||||||||||||||    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtac 25919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 446937 - 446984
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  446937 tgatgacagagcatcatatgatatttt-tgctatgtttttagtactttt 446984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 8892 - 8841
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtacttttatt 128  Q
    |||||| ||| ||||||||||||||||| | ||| |||||||||||||||||    
T  8892 tgatgatggaacatcatatgatatttttggttatttttttagtacttttatt 8841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 13239 - 13203
Alignment:
Q  92 atatgatattttttgctatgtttttagtacttttatt 128  Q
    ||||||||||||| | |||||||||||||||||||||    
T  13239 atatgatatttttagttatgtttttagtacttttatt 13203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 22735 - 22670
Alignment:
Q  70 ggggttgtgatgacggagcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    |||||||||||||  || ||||||||   |||||| ||||||||||| ||||||||||| ||||||    
T  22735 ggggttgtgatgatagaccatcatataccatttttggctatgttttttgtacttttatttgcattt 22670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 27128 - 27079
Alignment:
Q  86 agcatcatatgatattttttgctatgtttttagtacttttattcgcattt 135  Q
    ||||||| ||||||||||  |||||||||||||||||||| || ||||||    
T  27128 agcatcacatgatattttcggctatgtttttagtacttttctttgcattt 27079  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 6128 - 6176
Alignment:
Q  77 tgatgacggagcatcatatgatattttttgctatgtttttagtactttt 125  Q
    |||||||  |||||||||||  |||||| ||||||||||||||||||||    
T  6128 tgatgacatagcatcatatggcatttttggctatgtttttagtactttt 6176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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