View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1213_low_40 (Length: 413)
Name: NF1213_low_40
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 40820452 - 40820822
Alignment:
| Q |
29 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40820452 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcagacataagcttctgcatatgtctggtg |
40820551 |
T |
|
| Q |
129 |
taacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccac |
228 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40820552 |
taaca-gctacaccttctgcaaattctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctttcac |
40820650 |
T |
|
| Q |
229 |
actccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttc--tgtttctgggtacaaatcctcgaaaacagctacatattgg |
326 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40820651 |
actccaaaggtgtcctcctaacacaccgacccgtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattgg |
40820750 |
T |
|
| Q |
327 |
cgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
398 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40820751 |
cgagctcaataaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
40820822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 380
Target Start/End: Original strand, 40825122 - 40825472
Alignment:
| Q |
31 |
tagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgta |
130 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| |||||||| |||| ||| |||||||| | | ||| |||| | ||||||||||||||| |
|
|
| T |
40825122 |
tagattgccagtccaagacatacaaccaatcccagtggtgtgagaatatgcaatgcaagagcaattctctatgcattggcttttacatatgtctggtgta |
40825221 |
T |
|
| Q |
131 |
acaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacac |
230 |
Q |
| |
|
|| ||| || || ||||||||| | ||||| |||| ||||||||||||||||||| |||||||||||| || || ||||| ||| | || ||||| |
|
|
| T |
40825222 |
act-gctgaactttgtgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttattattgaccttttcacac |
40825320 |
T |
|
| Q |
231 |
tccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattc--ttctgtttctgggtacaaatcctcgaaaacagctacatattggcg |
328 |
Q |
| |
|
| |||| ||||||| ||||||||| ||| ||||| || ||| || |||| || | |||| |||||| ||||||||| ||||| || ||||| || |
|
|
| T |
40825321 |
tgcaaaagtgtccttctaacacacccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatatcggta |
40825420 |
T |
|
| Q |
329 |
agctcattaaactacagcttgcaaatgctgcacatataccataaacatcaca |
380 |
Q |
| |
|
| ||| | |||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
40825421 |
acttcaatgaactacagcttgaaaatgccccacatataccataaacgtcaca |
40825472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 18)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 29 - 408
Target Start/End: Complemental strand, 20293389 - 20293009
Alignment:
| Q |
29 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtg |
128 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
20293389 |
agtagatttccagtccaagacatacagccaatcccagaatcatgagaatacgcaatgcaggagcaattatgcaaacataagcttctgcatatttctggtg |
20293290 |
T |
|
| Q |
129 |
taacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccac |
228 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| |||| | ||||||||||||||||| |||||||||||| |||||||||||| ||| |||| ||| |
|
|
| T |
20293289 |
taaca-gctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcac |
20293191 |
T |
|
| Q |
229 |
actccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttc--tgtttctgggtacaaatcctcgaaaacagctacatattgg |
326 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20293190 |
actccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattgg |
20293091 |
T |
|
| Q |
327 |
cgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgttcatctcact |
408 |
Q |
| |
|
||||||| | |||||||||||||||| || |||||||||||||||||||||||| |||||||||| |||| ||| ||||| |
|
|
| T |
20293090 |
tgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcact |
20293009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 30 - 398
Target Start/End: Original strand, 20169357 - 20169726
Alignment:
| Q |
30 |
gtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgt |
129 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||| |||||||||||| |||| ||| |||||||| | ||| |||| ||||||||||||||||| ||| |
|
|
| T |
20169357 |
gtagattgccggtccaagacatacaaccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtctgatgt |
20169456 |
T |
|
| Q |
130 |
aacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccaca |
229 |
Q |
| |
|
|||| | | |||||| |||||||||| ||||| || | || | |||||||||||||| |||||||||||| |||||||||||| ||| |||| |||| |
|
|
| T |
20169457 |
aacagtcaa-accttcagcaaaatctggaactttaatcatttgtagtttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcaca |
20169555 |
T |
|
| Q |
230 |
ctccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttc--tgtttctgggtacaaatcctcgaaaacagctacatattggc |
327 |
Q |
| |
|
|| |||||||||||| |||||||| ||| ||||| ||||||||| |||||| ||| ||||||||||| |||| |||| |||||||||||| |||| |
|
|
| T |
20169556 |
ctgcaaaggtgtccttcgaacacacccaccggtccagttatgtatattccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggt |
20169655 |
T |
|
| Q |
328 |
gagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
398 |
Q |
| |
|
||||||| | || |||| ||||||||||| |||||| | ||||||||||||| |||||| || ||||| |
|
|
| T |
20169656 |
gagctcaatgaattacaacttgcaaatgccccacataagtcgtaaacatcacactttgattcccgacttgt |
20169726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 31 - 285
Target Start/End: Complemental strand, 20300516 - 20300263
Alignment:
| Q |
31 |
tagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgta |
130 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| |||| ||||||||||| ||||||||| |||||||| | ||| ||||||||||||||||||||||||| | |
|
|
| T |
20300516 |
tagattcctagtccaagacatacaaccaattccagcatcatgagaattcgcaacgcatgagcaattctacaagcataagcttctgcatatgtctggtgca |
20300417 |
T |
|
| Q |
131 |
acaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacac |
230 |
Q |
| |
|
|| |||||||||||||||||| || | ||||| |||| |||||| ||||||| |||| |||||||||||| |||||||||||| ||| |||| |||| |
|
|
| T |
20300416 |
ac-agctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccatcttcctttgtactggtggttttattgttgaccctttaacac |
20300318 |
T |
|
| Q |
231 |
tccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattctt |
285 |
Q |
| |
|
| |||| ||||||| | ||||||| ||| |||||||| | | || ||||||||| |
|
|
| T |
20300317 |
tgaaaagctgtcctcctgacacacccaccagtccaattgtttctattccattctt |
20300263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 20302591 - 20302353
Alignment:
| Q |
29 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtg |
128 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| ||| | || || ||| ||| |||||||| | ||| ||||||||||||||||| ||||||| |
|
|
| T |
20302591 |
agtaaattcccagtccaagacatgcagccaatcccagcatcgttggagtatgcagtgcaagagcaattctccaagcataagcttctgcatatatctggtg |
20302492 |
T |
|
| Q |
129 |
taacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccac |
228 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||| |||| ||||||||||||||||||| ||| |||||||| |||||||||||| ||| |||| ||| |
|
|
| T |
20302491 |
taaca-gctacaccttctgcaaaatcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttgtggttttattgttgaccctttcac |
20302393 |
T |
|
| Q |
229 |
actccaaaggtgtcctcgtaacacaccgacccgtccaatt |
268 |
Q |
| |
|
||| ||||| | | ||| ||||||||| || |||||||| |
|
|
| T |
20302392 |
actgcaaagatcttctcctaacacacccactagtccaatt |
20302353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 49 - 398
Target Start/End: Complemental strand, 20272562 - 20272212
Alignment:
| Q |
49 |
catacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgc |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||| |||||||| | ||| |||| ||||||||||||||| |||||||| | || |||||| || |
|
|
| T |
20272562 |
catacagccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcatatgtcaggtgtaacga-ttaaaccttcagc |
20272464 |
T |
|
| Q |
149 |
aaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgta |
248 |
Q |
| |
|
|||||||| ||||| || || || | |||||||| ||||| |||||||||||| |||||||||||| || |||| | |||| |||||||||| || || |
|
|
| T |
20272463 |
aaaatctggaactttaatcgtctgtagtttcaaaatcccatcttcctttgtacttgtggttttattgtggaccctttcgcactgcaaaggtgtcttccta |
20272364 |
T |
|
| Q |
249 |
acacaccgacccgtccaattatgtatactccatt--cttctgtttctgggtacaaatcctcgaaaacagctacatattggcgagctcattaaactacagc |
346 |
Q |
| |
|
||||||| ||| | ||| || | ||| |||||| | | | ||| | ||| |||||||| | |||||| |||||||| ||| || | |||||||| |
|
|
| T |
20272363 |
acacacccaccagaccagttgtttattttccattcacgtatatttttaggttcaaatcctttcagacagctgcatattggtgaggtcgatgaactacaga |
20272264 |
T |
|
| Q |
347 |
ttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
398 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
20272263 |
ttgcaaatgcgccacatataccataaacatcacactctgaatctcggcttgt |
20272212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 29 - 382
Target Start/End: Complemental strand, 20278326 - 20277972
Alignment:
| Q |
29 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtg |
128 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| | |||||||| ||||| |||| ||| || ||||| | ||| |||| ||||||||| |||||||||| |
|
|
| T |
20278326 |
agtagtttccctgtccacgacatacagccaatcacggaatcatgggaatatgcaaggcaagaacaattctccaagcataggcttctgcaaatgtctggtg |
20278227 |
T |
|
| Q |
129 |
taacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccac |
228 |
Q |
| |
|
|||| ||||| | |||| |||||| ||| |||| |||| || |||||||||||| ||| ||||||| | | |||||||||||| | ||| | || |
|
|
| T |
20278226 |
taac-agctaaagcttcagcaaaagctggtactttcaccgtctgtaatttcaaaaacgcatcttcctttctccgtgtggttttattgttatccctactac |
20278128 |
T |
|
| Q |
229 |
actccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattct--tctgtttctgggtacaaatcctcgaaaacagctacatattgg |
326 |
Q |
| |
|
||| ||||| || ||| ||||||||| ||| ||||| |||||| | |||||||| | ||||||| ||| ||||||||| | |||| |||||||||| |
|
|
| T |
20278127 |
actgcaaagtggttctcctaacacacccaccggtccagttatgtccattccattcttgtatgtttctaggttcaaatcctctcagacagatacatattgg |
20278028 |
T |
|
| Q |
327 |
cgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacact |
382 |
Q |
| |
|
||| || | ||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
20278027 |
tgagaacaatgaactacagcttgcaaatgccccacatataccgtaaacatcacact |
20277972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 20090388 - 20090545
Alignment:
| Q |
53 |
cagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaa |
152 |
Q |
| |
|
||||||||| ||| || ||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
20090388 |
cagccaatctcagtgtcgtgacaatacgcaacgcaggagcaattatgcaaacataagctgctgcatatttctggtgcaac-agctacaccttctgcaaaa |
20090486 |
T |
|
| Q |
153 |
tctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggtttt |
211 |
Q |
| |
|
|||| ||||| |||| | ||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
20090487 |
tctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggtttt |
20090545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 20230430 - 20230205
Alignment:
| Q |
29 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtg |
128 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| |||||||||||||||||| || |||||||| | |||||||||| |||||||| |||| |||| |
|
|
| T |
20230430 |
agtagattgccggtccaagacatacagccaatcccatcatcatgagaatacgcaacacaagagcaattctccaaacataagattctgcatctgtcaggtg |
20230331 |
T |
|
| Q |
129 |
taacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccac |
228 |
Q |
| |
|
| | ||| |||||| |||||||||| ||||| |||| || | |||||||||||| | ||||||| ||| ||||||||||||| ||||||| || |
|
|
| T |
20230330 |
t-cccttctaaaccttcagcaaaatctggaactttaaccatctgtagtttcaaaaacccgtcttcctttctacctgtggttttattgccgatccttttac |
20230232 |
T |
|
| Q |
229 |
actccaaaggtgtcctcgtaacacacc |
255 |
Q |
| |
|
||| ||| ||| ||| | ||||||||| |
|
|
| T |
20230231 |
actgcaatggtttccgcctaacacacc |
20230205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 380
Target Start/End: Complemental strand, 20242380 - 20242028
Alignment:
| Q |
29 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtg |
128 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| || || ||||||||||||||| || |||||||| | ||||||||| |||||||| |||| |||| |
|
|
| T |
20242380 |
agtagattgccggtccaagacatacagccaatcacatcatgatgagaatacgcaacacaagagcaattctctaaacataagattctgcatgtgtcaggtg |
20242281 |
T |
|
| Q |
129 |
taacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatccttccac |
228 |
Q |
| |
|
|||| |||| |||||| |||||||||| ||||| |||| || | ||||| |||||||| ||||||| |||| |||||||||||| ||| |||| || |
|
|
| T |
20242280 |
taac-tgctaaaccttcagcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctacttgtggttttattggtgacccttttac |
20242182 |
T |
|
| Q |
229 |
actccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccatt--cttctgtttctgggtacaaatcctcgaaaacagctacatattgg |
326 |
Q |
| |
|
|| ||||||| || | ||||||||| || ||||| || | | ||||||||| | | ||||||||| |||||||| ||||| || || | ||| |
|
|
| T |
20242181 |
acagcaaaggtctctgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcaaactgg |
20242082 |
T |
|
| Q |
327 |
cgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcaca |
380 |
Q |
| |
|
||||||| | || ||||||||| ||| || |||||| ||||||||||||||| |
|
|
| T |
20242081 |
tgagctcaatgaattacagcttgtaaaatctccacatagaccataaacatcaca |
20242028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 396
Target Start/End: Complemental strand, 20282905 - 20282536
Alignment:
| Q |
29 |
agtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtg |
128 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| | |||||||| ||||| |||| ||| || ||||| | ||| |||| ||||||||| |||||||||| |
|
|
| T |
20282905 |
agtagtttccctgtccacgacatacagccaatcacggaatcatgggaatatgcaaggcaagaacaattctccaagcataggcttctgcaaatgtctggtg |
20282806 |
T |
|
| Q |
129 |
taacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctt-cca |
227 |
Q |
| |
|
|||| ||||| | |||| |||||| | | |||| ||| || | ||| ||||| ||| ||||||| | |||||||||||| | | |||| ||| |
|
|
| T |
20282805 |
taac-agctaaagcttcagcaaaagccggtactttcaccatctgtagtttgaaaaa-gcatattcctttctctgtgtggttttattg-ttagccttgcca |
20282709 |
T |
|
| Q |
228 |
cactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattct--tctgtttctgggtacaaatcctcgaaaac--agctacatat |
323 |
Q |
| |
|
|||| |||||| || ||| ||||||||| ||| ||||| ||||||||| |||||||| | ||||||| ||| ||||||||| | || || ||||||| |
|
|
| T |
20282708 |
cactgcaaaggggttctcctaacacacccaccggtccagttatgtatattccattcttgtatgtttctaggttcaaatcctctcagacagagatacatat |
20282609 |
T |
|
| Q |
324 |
tggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggctt |
396 |
Q |
| |
|
||| ||| || | || |||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||||| |
|
|
| T |
20282608 |
tggtgagaccaatgaattacagcttgcaaatgccccacatataccataagcatcacactctgagtcttggctt |
20282536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 373
Target Start/End: Complemental strand, 20288019 - 20287673
Alignment:
| Q |
31 |
tagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgta |
130 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||| ||| |||||||| | || ||| |||||| ||||||||||||||| |
|
|
| T |
20288019 |
tagattcccagtccaagacatacaaccaatcccagcggtgtgagaatatgcaatgcaagagcaattctctaagcatcggcttctacatatgtctggtgta |
20287920 |
T |
|
| Q |
131 |
acaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttc---ctttgtactcgtggttttattgctgatccttcca |
227 |
Q |
| |
|
| ||| ||||| ||||||||| | ||||| |||| | |||||||||||| |||| ||| ||||||||| ||||| ||||| ||| |||| || |
|
|
| T |
20287919 |
a-gtgctgaaccttgtgcaaaatcaggaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtggtgttattattgaccctttca |
20287821 |
T |
|
| Q |
228 |
cactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattc--ttctgtttctgggtacaaatcctcgaaaacagctacatattg |
325 |
Q |
| |
|
|||| |||| || |||| ||||||||| ||| ||||| || ||| || |||| || | |||| |||||| ||||||||| ||||| || ||||||| |
|
|
| T |
20287820 |
cactgcaaaagtatccttctaacacacccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatattg |
20287721 |
T |
|
| Q |
326 |
gcgagctcattaaactacagcttgcaaatgctgcacatataccataaa |
373 |
Q |
| |
|
| | ||| | ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
20287720 |
gtaacttcaatgaactacagcttgcgaatgccccacatataccataaa |
20287673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 20262986 - 20262861
Alignment:
| Q |
41 |
gtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctaca |
140 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||| || |||||||| | |||||||||| || ||||| |||| |||| ||| |||| | |
|
|
| T |
20262986 |
gtccaagacatacagccaatcacatcatgatgagaatacgcaacacaagagcaattctccaaacataagattttgcatttgtcaggtgcaac-tgctaaa |
20262888 |
T |
|
| Q |
141 |
ccttctgcaaaatctgaaacttcaacc |
167 |
Q |
| |
|
||||| |||||||||| ||||| |||| |
|
|
| T |
20262887 |
ccttcagcaaaatctggaactttaacc |
20262861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 20063836 - 20064002
Alignment:
| Q |
35 |
ttcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaa |
134 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||| | ||| |||||| ||| |||||||| | ||| ||||| |||||||||||||| ||||| | | |
|
|
| T |
20063836 |
ttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataaccttctgcatatgtccggtgtctc-a |
20063934 |
T |
|
| Q |
135 |
gctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtact |
202 |
Q |
| |
|
|||| || ||||||||| | ||||| |||| | ||||||||||||||||| ||| |||||||| |
|
|
| T |
20063935 |
gctattccacttgcaaaatcaggaactttaaccatcttcaatttcaaaaacccatcttcttttgtact |
20064002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 20064097 - 20064182
Alignment:
| Q |
310 |
aaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggct |
395 |
Q |
| |
|
|||||||| |||||||| | | ||| | ||||||||||||||||||| ||||| ||||||| |||||||||| ||||| |||||| |
|
|
| T |
20064097 |
aaacagctgcatattggtgtgttcaatgaactacagcttgcaaatgccccacatgtaccatatacatcacactctgattttcggct |
20064182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 20230148 - 20230076
Alignment:
| Q |
310 |
aaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacact |
382 |
Q |
| |
|
|||||||| || ||||||| ||||| | || ||||||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
20230148 |
aaacagctgcaaattggcgtgctcaatgaattacagcttgtaaatgccccacatagaccataaacatcacact |
20230076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 380
Target Start/End: Complemental strand, 20262836 - 20262661
Alignment:
| Q |
207 |
gttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccatt--cttctgtttctgggtacaaatc |
304 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| ||| | ||||||||| || ||||| || | | ||||||||| | | ||||||||| |||||| |
|
|
| T |
20262836 |
gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatc |
20262737 |
T |
|
| Q |
305 |
ctcgaaaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcaca |
380 |
Q |
| |
|
|| ||||| || |||| || ||||||| | || ||||||||| |||| || |||| | ||||||||||||||| |
|
|
| T |
20262736 |
ctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcaca |
20262661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 19937789 - 19937728
Alignment:
| Q |
35 |
ttcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaatt |
96 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||| |||||| ||||| || |||||||| |
|
|
| T |
19937789 |
ttcccagtccaagacatacaaccaatgtcagcatcataagaatatgcaacacaagagcaatt |
19937728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 19968928 - 19968867
Alignment:
| Q |
35 |
ttcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaatt |
96 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||| |||||| ||||| || |||||||| |
|
|
| T |
19968928 |
ttcccagtccaagacatacaaccaatgtcagcatcataagaatatgcaacacaagagcaatt |
19968867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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