View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_42 (Length: 405)
Name: NF1213_low_42
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 31795786 - 31796151
Alignment:
| Q |
30 |
caaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaaaatcacataatgccacagccacgtaagataaaa |
129 |
Q |
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| T |
31795786 |
caaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaaaatcacataatgctacagccacgtaagataaaa |
31795885 |
T |
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| Q |
130 |
agaattcttatacctggtccaaaccaaaagctctggtagtcattattggaagaaaaaacactggcatagagaaaataaaggaacacaattaataatacat |
229 |
Q |
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| T |
31795886 |
agaattcttatacctggtccaaaccaaaagctctgatagtcattattggaagaaaaaacactgacatagagaaaataaaggaacacaattaataatacat |
31795985 |
T |
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| Q |
230 |
acaaacataacgtggaaactttgaaattggagnnnnnnncaacaaccattgtctaacaaaaaccaaataataacattatgcaaatttttataacgcatat |
329 |
Q |
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| T |
31795986 |
acaaacataacgtgaaaactttgaaattggagaaaaaaacaacaaccattgtctaacaaaaaccaaataataacattatgcaaatttttataacgcatat |
31796085 |
T |
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| Q |
330 |
actactctcaaacacacactgaactcattacatccacaccctccgaagcaaatacccagcttcatc |
395 |
Q |
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| T |
31796086 |
actactctcaaacacacactgaactcattacatccacaccctccgaagcaaatacccaacttcatc |
31796151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 7371325 - 7371259
Alignment:
| Q |
30 |
caaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaa |
96 |
Q |
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| T |
7371325 |
caaacatcatagcggaatttatggttgcaacgctttcacattatcacccttcttttctgatgtggaa |
7371259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 24307435 - 24307374
Alignment:
| Q |
40 |
agcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaaaatca |
101 |
Q |
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|||||| ||| ||| ||||||||||||| | |||||||||||| |||||||||||| |||| |
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| T |
24307435 |
agcggaacttttgactgcaacactttcatagtaccacccttctcatttgatgtggaagatca |
24307374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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