View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_46 (Length: 396)
Name: NF1213_low_46
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 98 - 311
Target Start/End: Complemental strand, 21121424 - 21121212
Alignment:
| Q |
98 |
cttcatacctttcttggagaggaattctcaataagcagtactcagtctgttggcttagctaagttgagaaacggatgctagaaggataattgtgtggtgt |
197 |
Q |
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| T |
21121424 |
cttcatacctttcttggagaggaattctcaataagcagtactcagtctgttggcttagctaagttgagaaacggatgctagaaggataattgtgtggtgt |
21121325 |
T |
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| Q |
198 |
ttttgcactttatccttagacataagatattattattgcnnnnnnnnnnngttggaaaggataatatgatattattgtttggtcacagttctccttgctc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21121324 |
ttttgcactttatccttagacataagatattattattgc-ttttttttttgttggaaaggataatatgatattattgtttggtcacagttctccttgctc |
21121226 |
T |
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| Q |
298 |
ttccccccacctat |
311 |
Q |
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|||||| ||||||| |
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| T |
21121225 |
ttcccctcacctat |
21121212 |
T |
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