View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_47 (Length: 396)

Name: NF1213_low_47

Description: NF1213

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1213_low_47

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 176; E-Value: 1e-94

Query Start/End: Original strand, 8 - 187

Target Start/End: Original strand, 24376764 - 24376943

Alignment:

Q	8	ccaacaaaatcacatatttctctgtttttccctcttaaatcatcccaacaactagaattaactaattttcagttcaaaagtatcaaaattcacgtcaaca	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24376764	ccaacaaaatcacatatttctctgtttttccctcttaaatcatgccaacaactagaattaactaattttcagttcaaaagtatcaaaattcacgtcaaca	24376863	T

Q	108	ttcaaatcataacttcaacaaacatcaaaattaaacaagttcatgagtataaaactgcacaaaacctacctcaaaccacg	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24376864	ttcaaatcataacttcaacaaacatcaaaattaaacaagttcatgagtataaaactgcacaaaacctacctcaaaccacg	24376943	T

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Target: chr7; HSP #2

Raw Score: 44; E-Value: 6e-16

Query Start/End: Original strand, 324 - 367

Target Start/End: Original strand, 24377080 - 24377123

Alignment:

Q	324	ccctacctactataattgtactagcttttcagaacggttctcag	367	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24377080	ccctacctactataattgtactagcttttcagaacggttctcag	24377123	T

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