View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_5 (Length: 680)
Name: NF1213_low_5
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 29 - 530
Target Start/End: Original strand, 27057228 - 27057731
Alignment:
| Q |
29 |
aagttttgtcttactcgttgataaaagaaagaaggttgctctcaccaacaaaattgctcttccacacctcaaaatgaccctcaatatccccaacggtgtc |
128 |
Q |
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| T |
27057228 |
aagttttgtcttactcgttgataaaagaaagaaggttgctctcaccaacaaaattgcttttccacacctcaaaatgaccctcaatatccccaacggtgtc |
27057327 |
T |
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| Q |
129 |
attcgctcttttagcattcaaattcggagtgaacgacaattaactgccgtttggaggtatgtttgtcattttaaggtatggaagagcattttctgaagtg |
228 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27057328 |
gttcgctcttttagcattcaaattaggagtgaacgacaattaactgccgtttggaggtatgttggtcattttaaggtatggaagagcattttctgaagtg |
27057427 |
T |
|
| Q |
229 |
taaaaagcaattttcaaaagaaacatgaaattttaaaagcccataaggcctgcagttttattagacccataatttatatccgcccgtttttatttctgta |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27057428 |
taaaaagcaattttcaaaagaaacatgaaattttaaaagcccataaggcctgcagttttattagacccataatttatatccgcccgtttttatttctgta |
27057527 |
T |
|
| Q |
329 |
gtaacttcatttcccctaccaatgcttttgtgtagtaacttcatttaccgttatcaacatccatagttgtaactgttattactggcctcaatggatgttt |
428 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27057528 |
gtaacttcattttccctaccaatgcttttgtgtagtaacttcattcaccgttatcaacatccatagttgtagctgttattactggcctcaatggatgttt |
27057627 |
T |
|
| Q |
429 |
gctttgtctagctcccagctcctttgcactatatgtgttcaattctgattattcacaccatacactaaattatatggata--tttacttagataaaatat |
526 |
Q |
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| T |
27057628 |
gctttgtctagctcccatctcctttgcactatatgtgttcaattctgattatacacatcatacactaaattatatggatatttttacttaaataaaatat |
27057727 |
T |
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| Q |
527 |
atag |
530 |
Q |
| |
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|||| |
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| T |
27057728 |
atag |
27057731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 609 - 680
Target Start/End: Original strand, 27057730 - 27057801
Alignment:
| Q |
609 |
agattgaaaatttagatatttttaaaactcatacctccactattcttatgcgttgaaagtttatctcataac |
680 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27057730 |
agattgaaaatttacatatttttaaaactcatacctccaccattcttatgcgttgaaagtttatctcataac |
27057801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 3841447 - 3841387
Alignment:
| Q |
179 |
ttggaggtatgtttgtcattttaaggtatggaagagcattttctgaagtgtaaaaagcaat |
239 |
Q |
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|||||||||| || |||||||||| | ||| ||||||||||||||| |||||| |||||| |
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| T |
3841447 |
ttggaggtattttagtcattttaatgcgtgggagagcattttctgaaatgtaaagagcaat |
3841387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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