View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_50 (Length: 383)
Name: NF1213_low_50
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 58 - 367
Target Start/End: Complemental strand, 52476224 - 52475915
Alignment:
| Q |
58 |
gtttttaataccaataagtagtcacaatattttatgttgagttttcactgttagttgggaatttgaacttgcaagtgttaattcaggctagaaaaagagt |
157 |
Q |
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| T |
52476224 |
gtttttaataccaataagtagtcacaatattttatgttgagttttcactgttagttgggaatttgaacttgcaagtgttaattcaggctagaaaaagagt |
52476125 |
T |
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| Q |
158 |
tatggacatattggagaatgttatcagcaaaagaagacacgaaattgcagacaggcgtgtagattttcttcagcaacttttagcagatgatgaaaataat |
257 |
Q |
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| T |
52476124 |
tatggacatattggagaatgttatcagcaaaagaagacacgaaattgcagacaggcgtgtagattttcttcagcaacttttagcagatgatgaaaataat |
52476025 |
T |
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| Q |
258 |
tcagaaaaggatgaagtaacaacgctaacagataaagagatcaaagataatatcttaacgatgattattgctggtaaggagtatcagtattattgaattg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52476024 |
tcagaaaaggatgaagtaacaacgctaacagataaagagatcaaagataatatcttaacgatgattattgctggtaaggagtattagtattattgaattg |
52475925 |
T |
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| Q |
358 |
aaactcttga |
367 |
Q |
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|||||||||| |
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| T |
52475924 |
aaactcttga |
52475915 |
T |
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