View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_52 (Length: 372)
Name: NF1213_low_52
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 41 - 287
Target Start/End: Original strand, 3863158 - 3863415
Alignment:
| Q |
41 |
gactcaactgataacatgcttgagtataaaaccttgtgcttattatctatggtttataaaatgcgcttatgtagcatttgtacttattc-----tcataa |
135 |
Q |
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| T |
3863158 |
gactcaactggtaacatgcttgagtataaaaccttgtgcttattatctatggtttataaaatgcgcttatgtagcatttgtacttattctcgtatcataa |
3863257 |
T |
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| Q |
136 |
tatactgctaaactaattgttatacacaagtgtgctatatatagtattatcctacactttaag------gacaaaaaggtcccaccttcaaaacagcaag |
229 |
Q |
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| T |
3863258 |
tatactgctaaactaatggttatacacaagtgtggtatatatagtattatcctacactttaagaggtcagacaaaaaggtcccaccttcaaaacagcaag |
3863357 |
T |
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| Q |
230 |
catttattatcatgttccaataattatcaaatcaactttcaactctatacacatcact |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3863358 |
catttattatcatgttccaataattatcaaatcaactttcaactctatacacatcact |
3863415 |
T |
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