View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_54 (Length: 368)
Name: NF1213_low_54
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 42306629 - 42306280
Alignment:
| Q |
9 |
gaagaatattcactaaattctctatattattannnnnnnnnctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccac |
108 |
Q |
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| T |
42306629 |
gaagaatattcactaaattctctatattattatttttttt-ctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccac |
42306531 |
T |
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| Q |
109 |
atttctttctcatatcttgaagaatctggctgaaaagtatgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatctt |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306530 |
atttctttctcatatcttgaagaatctggctgaagagtatgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatctt |
42306431 |
T |
|
| Q |
209 |
caggttgtagcttctg-tgctggtcaaaatcaatacagtttcaaatacattacattttcatagtattgatcataattattcatggcaaatttttaaggat |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306430 |
caggttgtagcttctgttgctggtcaaaatcaatacagtttcaaatacattacattttcatagtattgatcataattattcatggcaaatttttaaggat |
42306331 |
T |
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| Q |
308 |
aaaaccacgtcggttcactgtggacagtgcattttgatgtgttttatttta |
358 |
Q |
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|||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
42306330 |
aaaaccacatcggttcacagtggacggtgcattttgatgtgttttatttta |
42306280 |
T |
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