View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_56 (Length: 363)

Name: NF1213_low_56
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_56
NF1213_low_56
[»] chr1 (9 HSPs)
chr1 (66-353)||(24415470-24415757)
chr1 (66-267)||(24322095-24322296)
chr1 (192-353)||(24365101-24365265)
chr1 (74-179)||(24366796-24366901)
chr1 (66-268)||(24309810-24310012)
chr1 (124-232)||(24340105-24340213)
chr1 (152-231)||(24365014-24365091)
chr1 (300-353)||(24367026-24367079)
chr1 (300-353)||(24369356-24369409)
[»] chr8 (1 HSPs)
chr8 (74-174)||(15348503-15348603)
[»] chr4 (4 HSPs)
chr4 (66-179)||(48870175-48870288)
chr4 (66-179)||(48885861-48885974)
chr4 (74-143)||(48891050-48891119)
chr4 (281-353)||(7822817-7822889)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 66 - 353
Target Start/End: Original strand, 24415470 - 24415757
Alignment:
Q  66 tcttatttgtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacact 165  Q
    ||||||| ||||||||||||||   ||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24415470 tcttattcgtttcaaatgcgttcgtaagtcttggttttctcttatttcaaatcc-agttttgcaaattcacagtttcagattactgctgcaacacacact 24415568  T
Q  166 cgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcattg-tttaccggtaattctgctcctactttactcaaccctaat 264  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||    
T  24415569 cgtcgaattctgttcgtaacagagacttctgaacttcgatccatagctttggattcattgttttaccgatcattctgctcctactttacttaaccctaat 24415668  T
Q  265 tttgttcacaaacttgattttcctatcgaaattataggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 353  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  24415669 tttgttcacaaacttgatttacctatcaaaattataggttcatgtagagggttcatatttttttactcttatacaaacatttacctatg 24415757  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 66 - 267
Target Start/End: Original strand, 24322095 - 24322296
Alignment:
Q  66 tcttatttgtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacact 165  Q
    ||||||| |||||||||||||||  ||| | |||||||||||| | ||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  24322095 tcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaatcctcgttttgcaaattcacagtttctgaatactgctgcaacacacact 24322194  T
Q  166 cgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcattgtttaccggtaattctgctcctactttactcaaccctaatt 265  Q
    ||||||||||||||||||||||||| | || || ||||||| ||| |||| ||||||||||| |||  | |||||||||||  | ||||  |||||||||    
T  24322195 cgtcgaattctgtttgtaacagaaattcctcaatttcgatctatacctttagattcattgttcaccactgattctgctcctgttctactggaccctaatt 24322294  T
Q  266 tt 267  Q
    ||    
T  24322295 tt 24322296  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 192 - 353
Target Start/End: Original strand, 24365101 - 24365265
Alignment:
Q  192 ttctgaacttcgatccatagctttggattcattgtttaccggtaattctgctcctactttactcaaccctaattttg---ttcacaaacttgattttcct 288  Q
    |||| ||||||||||||||| |||||||||||||||||| | | ||||||||  | |||  || ||||| ||||||    || ||||||||||||||  |    
T  24365101 ttctaaacttcgatccatagttttggattcattgtttacagatcattctgcttttgcttctcttaaccccaattttccacttgacaaacttgattttgat 24365200  T
Q  289 atcgaaattataggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 353  Q
     |  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  24365201 cttaaaattataggttcatgtagagggttcatatttttgtactcttatccaaacttttagctatg 24365265  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 24366796 - 24366901
Alignment:
Q  74 gtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaat 173  Q
    |||||||||| ||||  ||| |||||||||||||| | |||||||||   |||||||||||||||||||||||||||||||||||||||| || || |||    
T  24366796 gtttcaaatgtgtttgcaagtcatggttttctcttatctcaaatccttactttgcaaattcacagtttcagattactgctgcaacacacaatcatcaaat 24366895  T
Q  174 tctgtt 179  Q
    ||||||    
T  24366896 tctgtt 24366901  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 268
Target Start/End: Original strand, 24309810 - 24310012
Alignment:
Q  66 tcttatttgtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacact 165  Q
    ||||||| ||||||||| |||||  |||  ||||||||||||| | ||  || ||   |||||||||||||| |||||  ||||| || ||||||||||     
T  24309810 tcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttacttcttcaacacacacc 24309909  T
Q  166 cgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcattgtttaccggtaattctgctcctactttactcaaccctaatt 265  Q
    ||| ||||||| ||  |||||| || | ||||| ||||||| |||||||| ||||||||||||||   | ||||||||||| || || | ||||||||||    
T  24309910 cgtagaattctcttcataacaggaattcctgaatttcgatctatagctttagattcattgtttacttctgattctgctcctgctctattgaaccctaatt 24310009  T
Q  266 ttg 268  Q
    |||    
T  24310010 ttg 24310012  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 24340105 - 24340213
Alignment:
Q  124 tttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcat 223  Q
    |||||||||||||| |||||  ||||||||||||||||||||| | ||||||| ||  | |||| |||| ||||  ||||||  |||||| | ||||| |    
T  24340105 tttgcaaattcacactttcaagttactgctgcaacacacactcttagaattctcttcctgacagcaactcctgagtttcgatatatagctgtagattcgt 24340204  T
Q  224 tgtttaccg 232  Q
    |||||||||    
T  24340205 tgtttaccg 24340213  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 24365014 - 24365091
Alignment:
Q  152 ctgcaacacacactcgtcgaattctgtttgtaacagaaacttctgaacttcgatccatagctttggattcattgtttacc 231  Q
    ||||||| ||||||| ||||||||||||   ||  ||||||| |||| ||||||||||| |||| |||||||||||||||    
T  24365014 ctgcaacccacactcatcgaattctgttctcaa--gaaacttatgaagttcgatccataactttagattcattgtttacc 24365091  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 24367026 - 24367079
Alignment:
Q  300 aggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 353  Q
    |||||||||| ||||||| ||||| ||| |||||| | ||||||||||||||||    
T  24367026 aggttcatgtcgagggtttatattgttgcactcttcttcaaacatttacctatg 24367079  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 24369356 - 24369409
Alignment:
Q  300 aggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 353  Q
    |||||||||||||||||| ||| ||||||||||| |||| || |||||| ||||    
T  24369356 aggttcatgtagagggtttatacttttgtactctaatccgaaaatttacttatg 24369409  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 15348503 - 15348603
Alignment:
Q  74 gtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacactcgtcgaat 173  Q
    |||||||||||||||  ||| | |||||||||||| | ||  |||||   || ||||||||||| ||||| ||||| || ||||||||||||||| ||||    
T  15348503 gtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaat 15348602  T
Q  174 t 174  Q
    |    
T  15348603 t 15348603  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 48870175 - 48870288
Alignment:
Q  66 tcttatttgtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacact 165  Q
    ||||||| |||||||||||||||  ||| | ||||||| |||| | ||  ||||   ||||||||||||||| |||||  | || || ||||||||||||    
T  48870175 tcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattcacattttcatctcacagccgcaacacacact 48870274  T
Q  166 cgtcgaattctgtt 179  Q
    ||| | ||||||||    
T  48870275 cgtaggattctgtt 48870288  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 48885861 - 48885974
Alignment:
Q  66 tcttatttgtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttcagattactgctgcaacacacact 165  Q
    ||||||| |||||||||||||||  ||| | ||||||| |||| | ||  ||||   ||||||||||||||| |||||  | || || ||||||||||||    
T  48885861 tcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattcacattttcatctcacagccgcaacacacact 48885960  T
Q  166 cgtcgaattctgtt 179  Q
    ||| | ||||||||    
T  48885961 cgtaggattctgtt 48885974  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 48891050 - 48891119
Alignment:
Q  74 gtttcaaatgcgtttcgaaggcatggttttctcttgtttcaaatcctagttttgcaaattcacagtttca 143  Q
    |||||||||||||||  ||| | |||||||||||||| ||| |||||  |||||||||||| || |||||    
T  48891050 gtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttca 48891119  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 7822817 - 7822889
Alignment:
Q  281 attttcctatcgaaattataggttcatgtagagggttcatatttttgtactcttatccaaacatttacctatg 353  Q
    |||||||| | ||||||||||| |||||| |||||||  ||||||| |||  || |||| |||||||||||||    
T  7822817 attttccttttgaaattatagggtcatgtggagggtttttatttttataccgttttccagacatttacctatg 7822889  T

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