View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1213_low_59 (Length: 342)

Name: NF1213_low_59
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1213_low_59
NF1213_low_59
[»] chr8 (1 HSPs)
chr8 (89-309)||(44247991-44248211)
[»] chr7 (1 HSPs)
chr7 (89-309)||(11806909-11807129)
[»] chr5 (5 HSPs)
chr5 (97-309)||(15284357-15284569)
chr5 (139-299)||(15287356-15287516)
chr5 (160-299)||(15262931-15263070)
chr5 (145-308)||(15256676-15256839)
chr5 (152-296)||(15265213-15265357)
[»] chr3 (1 HSPs)
chr3 (98-308)||(51383543-51383753)
[»] chr6 (1 HSPs)
chr6 (244-289)||(6554179-6554224)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 89 - 309
Target Start/End: Complemental strand, 44248211 - 44247991
Alignment:
Q  89 aggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44248211 aggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgc 44248112  T
Q  189 aggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttgg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44248111 aggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatatttgg 44248012  T
Q  289 aatgagattttgttggagatg 309  Q
    ||||||||||| ||| |||||    
T  44248011 aatgagatttttttgcagatg 44247991  T

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Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 89 - 309
Target Start/End: Complemental strand, 11807129 - 11806909
Alignment:
Q  89 aggaagctgaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgc 188  Q
    ||||||||||||||||||| | |||| || ||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  11807129 aggaagctgaaaatgctaaggaaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgc 11807030  T
Q  189 aggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttgg 288  Q
    ||||||||||| | |||||||||||||||||||||   ||||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||    
T  11807029 aggagcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttgg 11806930  T
Q  289 aatgagattttgttggagatg 309  Q
    ||||||||||| |||||||||    
T  11806929 aatgagatttttttggagatg 11806909  T

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Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 97 - 309
Target Start/End: Original strand, 15284357 - 15284569
Alignment:
Q  97 gaaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgcaggagctt 196  Q
    ||||||||||  | ||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||    
T  15284357 gaaaatgctagggcaaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgctggtgctt 15284456  T
Q  197 atatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagat 296  Q
    |||||||||||||||||||||| ||  | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15284457 atatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagat 15284556  T
Q  297 tttgttggagatg 309  Q
    |||||||||||||    
T  15284557 tttgttggagatg 15284569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 15287516 - 15287356
Alignment:
Q  139 gaggtgcttgatataacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatg 238  Q
    |||||| | ||| |||| || ||||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||| ||  | ||||||||  |||    
T  15287516 gaggtgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatggagttccaaaatatg 15287417  T
Q  239 tacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagatttt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15287416 tacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagatttt 15287356  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 160 - 299
Target Start/End: Original strand, 15262931 - 15263070
Alignment:
Q  160 ttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcatt 259  Q
    |||||||| |||||||||||||||||| |||| ||||| |||||||||||||| || || ||  | ||||||||| |||| |||||||||||||||||||    
T  15262931 ttggcattgttgagaccagatggtcatccaggtgcttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttcatt 15263030  T
Q  260 ggtgcttgccaggacctatagatacttggaatgagatttt 299  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  15263031 ggtgtttgcctggacctatagatacttggaatgagatttt 15263070  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 145 - 308
Target Start/End: Complemental strand, 15256839 - 15256676
Alignment:
Q  145 cttgatataacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaa 244  Q
    |||||| |||| || |||||||| |||||||||||||||||| ||||  |||||||| | |||||||||||||| ||  | |||||| |   ||| || |    
T  15256839 cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatgtacccttttccatttgccaatggtgttccagaacgtgtgcaga 15256740  T
Q  245 atgattgtgttcattggtgcttgccaggacctatagatacttggaatgagattttgttggagat 308  Q
    ||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||  |||||||    
T  15256739 atgattgtgttcattggtgtttgcctggacctatagacacatggaatgagatttttctggagat 15256676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 152 - 296
Target Start/End: Complemental strand, 15265357 - 15265213
Alignment:
Q  152 taacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattg 251  Q
    ||||||| ||||| || || ||||||||||||||| ||||  ||||||||||||||||||||||   |||  |||||| | |  |||| |||||||||||    
T  15265357 taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttttccattctttaatggggttcaagaacatgtgcaaaatgattg 15265258  T
Q  252 tgttcattggtgcttgccaggacctatagatacttggaatgagat 296  Q
    |||||||||||| ||||| ||||| || ||||| |||||||||||    
T  15265257 tgttcattggtgtttgcctggaccaattgatacatggaatgagat 15265213  T

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Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 98 - 308
Target Start/End: Original strand, 51383543 - 51383753
Alignment:
Q  98 aaaatgctaaagtaaaagctcaacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgcaggagctta 197  Q
    ||||||||||   ||||||| ||||| | ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  51383543 aaaatgctaagtcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggagccta 51383642  T
Q  198 tatgaatccttttccatttgctaaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagatt 297  Q
     |||||||||||||||||||||||  |  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  51383643 catgaatccttttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgccaggacctatagacacttggaatgagatt 51383742  T
Q  298 ttgttggagat 308  Q
    || ||||||||    
T  51383743 tttttggagat 51383753  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 6554224 - 6554179
Alignment:
Q  244 aatgattgtgttcattggtgcttgccaggacctatagatacttgga 289  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||    
T  6554224 aatgattgtgttcattggtgtttgccagggcctatagatacatgga 6554179  T

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