View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1213_low_61 (Length: 325)
Name: NF1213_low_61
Description: NF1213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1213_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 75952 - 75649
Alignment:
| Q |
12 |
agagagacggggagccacaattccaagagagttaataagtgaaagggaatgattgcctaaagataaaatctatttttagaattggacagatcttaaatct |
111 |
Q |
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| T |
75952 |
agagagacggggagccacaattccaagagagttaataagtgaaagggaatgattgcctaaagataaaatctatttgtagaattggacagatcttaaatct |
75853 |
T |
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| Q |
112 |
ttggaatagttgatcattgacaagcttttggtgtttgtttataaaagaaattattacctctgtatataggttttaaagtcaatttggcacattttgacaa |
211 |
Q |
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| T |
75852 |
ttggaatagttgatcattgacaagcttttggtgtttgtttataaaagaaattattacctctgtatataggttttaaagtcaatttggcacattttgacaa |
75753 |
T |
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| Q |
212 |
tggccaatatggagttgacattatcatataactgttttctgatgttatattggtgacaggatttaaggcaatggattcgacttcaattgacataatggct |
311 |
Q |
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| T |
75752 |
tggccaatatggagttgacattatcatataactgttttctgatgttatattggtgacaggatttaaggcaatggattcgacttcaattgacataatggct |
75653 |
T |
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| Q |
312 |
ttac |
315 |
Q |
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|||| |
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| T |
75652 |
ttac |
75649 |
T |
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